Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00699
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   115   4e-26
Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    29   4.7  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   4.7  
Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  115 bits (276), Expect = 4e-26
 Identities = 49/87 (56%), Positives = 68/87 (78%)
 Frame = +2

Query: 233 ERSCFLFAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYELA 412
           + + F  AEAKFT GDF+  V+QNV++AQ ++R KK+NV GV LP+F++YQDG D Y+L 
Sbjct: 65  KEAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDGPDAYDLT 124

Query: 413 GLARGGQQLAKLKKNFQSAVKLLVELA 493
           GL +GG  +A+LKKN+  A++LLVELA
Sbjct: 125 GLGKGGANIARLKKNYNKAIELLVELA 151



 Score =  103 bits (246), Expect = 2e-22
 Identities = 51/67 (76%), Positives = 56/67 (83%)
 Frame = +3

Query: 54  GKDRLAIFPSRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVM 233
           GKDR+A+FPSR AQ L+K RL GA KGH LLKKKADAL +RFR IL KI+E K LMGEVM
Sbjct: 5   GKDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVM 64

Query: 234 KEAAFSL 254
           KEAAFSL
Sbjct: 65  KEAAFSL 71



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 36/46 (78%), Positives = 43/46 (93%)
 Frame = +1

Query: 511 VTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFYR 648
           +TLDE IK+TNRRVNAIEHVIIPR+E TL YI++ELDE+EREEF+R
Sbjct: 158 ITLDEAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMEREEFFR 203


>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 311 KAQIKIRSKKDNVAGVTLPIFES---YQDGSDTYELAGLARGGQQLAKLKKNFQS 466
           K  IKI  +  ++  +   +FE+    +D +   ELA L  G Q+L K+KK+F++
Sbjct: 21  KKPIKIEGRSGDLKQLKSALFENKGPVKDEAREEELAALKAGNQELKKMKKDFET 75


>Z78416-5|CAB01681.1| 1137|Caenorhabditis elegans Hypothetical
           protein C23H4.6 protein.
          Length = 1137

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +1

Query: 442 KAQEELPERCEAFGRVSVTADFIVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELD 621
           KAQ++L E    FG   +T       D+   + N  +  IEHV +  L +    +  EL 
Sbjct: 384 KAQKQLREALGKFGHEELTKKLAEAEDKRESL-NIEIEEIEHVQLKALRKKYEKLTKELR 442

Query: 622 ELEREEF 642
             E E+F
Sbjct: 443 NEEEEKF 449


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 239
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 87  NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 139


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 81  SRGAQMLIKGRLAGAVKGHGLLKKKADALQVRFRMILSKIIETKTLMGEVMKE 239
           ++G Q    G LA   K  GL K++ +  +  F  ++ K  +  TLM   +KE
Sbjct: 191 NKGDQAANFGNLAQGAKAEGLTKEQQEDAKRAFLNVVCKAQDVSTLMPNDLKE 243


>Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical
           protein F43G6.3 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -1

Query: 609 DDVRECTFQP-GNDYVLNGVDTSIRDLNNLVESDNEVCSDANSTKSFTALWKFFLSFASC 433
           DD R   F+   +  +LNGV     D+ N       +  DA   + +  LW+   S  S 
Sbjct: 72  DDYRSVVFEMIPSLIILNGVTIVGEDVPNYSRIPKSIREDAEKERQWIILWQLLSSPKSE 131

Query: 432 CPPRAK 415
             PR K
Sbjct: 132 TRPRHK 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,587,671
Number of Sequences: 27780
Number of extensions: 301800
Number of successful extensions: 797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)