Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00697
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    30   0.30 
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      28   0.93 
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    26   5.0  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    25   6.5  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   6.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   8.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.7  

>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 222 SLFLLPSNLRGVPALYQSVSSRGGTYRSRVLGSMDTTGPHLCGS----LAQRRLPIFPLT 55
           SL ++P N+ GV  LY  +    G Y   V+   D T   L  +    L  R + I+P+T
Sbjct: 667 SLCIIPMNVNGVSTLYLHIGLMNGVYLRTVI---DVTSGQLLDTRTRFLGPRAVKIYPIT 723

Query: 54  V 52
           +
Sbjct: 724 M 724


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +3

Query: 378 AALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTLKS 515
           A  + L S+   S+  +  TSP L    KD+S  +DILK+    KS
Sbjct: 215 ARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMHRRTKS 260


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 442 GDVCSAPLTDRPRADGNSFNAAVSDVTGSVAVVHRH-DGNPVGYLLS 305
           GD+ S PL D P  D  +      +  G++ + +   D N + Y+L+
Sbjct: 258 GDMISVPLQDSPNPDFPTVKFPNPEEEGALDLAYEQADANGISYVLA 304


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 251 TKASYPVKVSHFSFSPVIYVVYQP-STNRYL 162
           T+   PVK  H+  SPV  V Y P  TN Y+
Sbjct: 219 TRCLTPVKDFHYDDSPVNDVEYHPHHTNLYI 249


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +3

Query: 327 FPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDILKIL 500
           F + L+    +  T E A     PS+       A    P +S+P K  S  T +LK++
Sbjct: 307 FFNLLYEKFVIGKTKEPAKPVPQPSSNEPPAPSAENKQPSVSSPEKKESPATHLLKVI 364


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 375 TAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPT 482
           +++L   PS  G S+  +L +SP   +P   SSLP+
Sbjct: 145 SSSLTSSPSNSGLSLDKSLPSSPKGDSPSLSSSLPS 180


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -1

Query: 589 SGSSSLRAVRTRLHSISPFYQAHARDFNVVRI-----FRISVGNDESF 461
           S ++S+   RT    +  FY+   +D N VR+     F +++G D SF
Sbjct: 3   SRNASIANERTDEARMFNFYEKMPKDTNTVRVFDRGEFYVAIGEDASF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,302
Number of Sequences: 5004
Number of extensions: 56274
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)