Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00697
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251...    35   0.044
06_03_0105 + 16693771-16693780,16693833-16693876,16694274-166943...    30   1.6  
05_06_0104 - 25603568-25603867,25603965-25604162,25604247-256045...    29   3.8  
10_08_0936 - 21679002-21679800,21679893-21680116,21681174-216813...    27   8.8  
04_01_0408 - 5393354-5393659,5393974-5394219,5394442-5394583,539...    27   8.8  

>03_05_1060 -
           30023407-30023553,30024274-30024390,30024958-30025129,
           30026116-30026198,30026299-30026917,30027157-30027280,
           30027637-30027745,30028214-30028399,30028716-30028763,
           30028808-30028979,30029034-30029209
          Length = 650

 Score = 35.1 bits (77), Expect = 0.044
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 1/135 (0%)
 Frame = +3

Query: 78  ASEPDYHTNEDLLYPYSPIP-YFGMYHLVKIPIGRGLVHHVDYWGEGKVTNLDRVRGFRR 254
           AS P Y  ++ +  PY  I  +FG+     +  G G  + V    EG++T L R  G  R
Sbjct: 248 ASSPIYEVSQ-INRPYGQIKRWFGIRLYYALRDGTGSSNVVASMSEGRLTTLLRSIGIGR 306

Query: 255 ATM*TNSLRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQ 434
               T + + S R   ++++ PT    C    +T+         +   SA  R+     +
Sbjct: 307 ERSNTGTNKLSCRGPRKKNR-PTKRLDCRPPVSTVDTAGAPLEGEEKASAANRAPVSGGR 365

Query: 435 TSPGLSTPPKDSSLP 479
            SPGL  P     LP
Sbjct: 366 RSPGLKWPWLCPDLP 380


>06_03_0105 +
           16693771-16693780,16693833-16693876,16694274-16694348,
           16694548-16694784,16694880-16695050,16695137-16695250
          Length = 216

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 365 NWKCRCRPQTRRESCWVF 312
           N+ CRCRP+ RR   W +
Sbjct: 5   NYVCRCRPENRRNKGWAY 22


>05_06_0104 -
           25603568-25603867,25603965-25604162,25604247-25604526,
           25604615-25605419,25605518-25606673
          Length = 912

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 396 PSARGRSVSGALQTSPGLSTPPKDSSLPTDILKILTTLKS 515
           P +  R VSGAL+  P  S PP      T ++K++   +S
Sbjct: 61  PDSFERVVSGALKKLPSQSPPPDSVPASTALIKVIRRAQS 100


>10_08_0936 -
           21679002-21679800,21679893-21680116,21681174-21681361,
           21681505-21682597
          Length = 767

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +3

Query: 276 LRSSVRATARESKYPTGFPSCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLST 455
           LRS     A  S++  G PS   +  T PV   TAA  L P+      S    +S    T
Sbjct: 42  LRSLRLTAAALSRFAQGHPSLAVSHHTAPVLLTTAAPALAPTPTPPPPSSTASSSLPPPT 101

Query: 456 P--PKDSSLP 479
           P  PK    P
Sbjct: 102 PLLPKHQQAP 111


>04_01_0408 -
           5393354-5393659,5393974-5394219,5394442-5394583,
           5394981-5395076,5395153-5395265,5395345-5395559,
           5395645-5395742,5395815-5395935,5396020-5396240,
           5396625-5396805,5396906-5397188,5397346-5397395,
           5398565-5398805
          Length = 770

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -1

Query: 523 HARDFNVVRIFRI-SVGNDESFGGVDNPGDVCSAPLTDRPRADGNSFNAAVSDVTGSVAV 347
           H RD  + R+    S+G +  F  +    +      ++  +  G + +   S    + A+
Sbjct: 244 HLRDMELKRLAGDESLGKEAYFAYIAEGLEESMVDWSEVMKFQGKNGSLFNSPAATAAAL 303

Query: 346 VHRHDGNPVGYLLSL 302
           VHR+D   +GYL S+
Sbjct: 304 VHRYDDKALGYLYSV 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,934
Number of Sequences: 37544
Number of extensions: 395442
Number of successful extensions: 1184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)