Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00697
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 33 0.16
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 32 0.37
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 32 0.37
AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical ... 32 0.37
U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily as... 28 4.5
U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily ass... 28 4.5
U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily ass... 28 4.5
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr... 27 7.9
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein. 27 7.9
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 33.1 bits (72), Expect = 0.16
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +3
Query: 282 SSVRATARESKYPTGFPSCLWTTATLP-VTSET-AALKLLPSARGRSVSGALQTSPGLST 455
SS +T + T PS T T+P TSE A + + +G L TS + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398
Query: 456 PPKDSSLPTDILKILTTL 509
PP + P D L + T+
Sbjct: 399 PPYPENCPEDSLFLPGTI 416
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 31.9 bits (69), Expect = 0.37
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 586 GSSSLRAVRT----RLHSISPFYQAHARDFNVVRIFRISVGNDESFGGVDNPGDVCSAPL 419
G+S + AVRT L S SP QA A+ + ++ GN E FG + + + +
Sbjct: 167 GASLILAVRTCFNIYLTSKSPINQATAKG-TLTQVINTVFGNMEKFGNIKDDETIVREVV 225
Query: 418 TDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVG 317
N+ + VSD T HR +G+ +G
Sbjct: 226 EVLV---SNTISNEVSDETSEAGGTHRQNGSTMG 256
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 31.9 bits (69), Expect = 0.37
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 586 GSSSLRAVRT----RLHSISPFYQAHARDFNVVRIFRISVGNDESFGGVDNPGDVCSAPL 419
G+S + AVRT L S SP QA A+ + ++ GN E FG + + + +
Sbjct: 167 GASLILAVRTCFNIYLTSKSPINQATAKG-TLTQVINTVFGNMEKFGNIKDDETIVREVV 225
Query: 418 TDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVG 317
N+ + VSD T HR +G+ +G
Sbjct: 226 EVLV---SNTISNEVSDETSEAGGTHRQNGSTMG 256
>AL032650-1|CAE54929.1| 551|Caenorhabditis elegans Hypothetical
protein Y6B3A.1b protein.
Length = 551
Score = 31.9 bits (69), Expect = 0.37
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Frame = -1
Query: 586 GSSSLRAVRT----RLHSISPFYQAHARDFNVVRIFRISVGNDESFGGVDNPGDVCSAPL 419
G+S + AVRT L S SP QA A+ + ++ GN E FG + + + +
Sbjct: 167 GASLILAVRTCFNIYLTSKSPINQATAKG-TLTQVINTVFGNMEKFGNIKDDETIVREVV 225
Query: 418 TDRPRADGNSFNAAVSDVTGSVAVVHRHDGNPVG 317
N+ + VSD T HR +G+ +G
Sbjct: 226 EVLV---SNTISNEVSDETSEAGGTHRQNGSTMG 256
>U80450-11|AAM15595.1| 664|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform d protein.
Length = 664
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 198 DYWGEGKVTNLDRVRGFRRATM-*TNSLRSSVRATARESKYPT 323
+YWG G+V N+ V +RA + T++L+ + AR Y T
Sbjct: 167 NYWGNGEVDNVQVVDQAQRAVITPTSTLQRRPKPPARSGSYRT 209
>U80450-9|AAK77615.1| 1112|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform a protein.
Length = 1112
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 198 DYWGEGKVTNLDRVRGFRRATM-*TNSLRSSVRATARESKYPT 323
+YWG G+V N+ V +RA + T++L+ + AR Y T
Sbjct: 167 NYWGNGEVDNVQVVDQAQRAVITPTSTLQRRPKPPARSGSYRT 209
>U80450-8|AAK77616.1| 949|Caenorhabditis elegans Temporarily
assigned gene nameprotein 163, isoform c protein.
Length = 949
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 198 DYWGEGKVTNLDRVRGFRRATM-*TNSLRSSVRATARESKYPT 323
+YWG G+V N+ V +RA + T++L+ + AR Y T
Sbjct: 167 NYWGNGEVDNVQVVDQAQRAVITPTSTLQRRPKPPARSGSYRT 209
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical protein
C29A12.4 protein.
Length = 1560
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -1
Query: 451 DNPGDVCSAPLTDRPRADGNSF----NAAVSDVTGSVAVVHRH-DGNPV 320
D D C+ PL +P +GN + A +++ G+ A + R+ +GN V
Sbjct: 1501 DRSNDSCTQPLLAKPHINGNGYEPLKGAVIANGNGATATMMRNGNGNGV 1549
>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 333 SCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 488
S + ATLP + + + S R RSV+ + Q S G P D +DI
Sbjct: 599 SMRYRVATLPQSLSEDKVSIPSSKRDRSVTPSWQRSTGYDLTPADEIDESDI 650
>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
protein F13E6.6 protein.
Length = 1340
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 333 SCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 488
S + ATLP + + + S R RSV+ + Q S G P D +DI
Sbjct: 599 SMRYRVATLPQSLSEDKVSIPSSKRDRSVTPSWQRSTGYDLTPADEIDESDI 650
>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
Length = 1293
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +3
Query: 333 SCLWTTATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPPKDSSLPTDI 488
S + ATLP + + + S R RSV+ + Q S G P D +DI
Sbjct: 552 SMRYRVATLPQSLSEDKVSIPSSKRDRSVTPSWQRSTGYDLTPADEIDESDI 603
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,763
Number of Sequences: 27780
Number of extensions: 321716
Number of successful extensions: 1075
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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