Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00697
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.33 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.77 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   4.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   7.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.4  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              21   9.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.4  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 254 PTKASYPVKVSHFSFSPVIYVVYQPSTNRYLHEVVHTEV 138
           PT  +   +   FSF     +VY+PS  R  HE+  T+V
Sbjct: 495 PTPTTESEERRFFSFHQWGILVYEPSACRPRHEIRSTDV 533


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 48  KTPSEEKWEAASEPDYHTNEDLLYPYSPIPYFGMYHLVKIPIGRGLVHHVDYWGEGKVTN 227
           K     K    S+ + +  ED++ P      +  +  ++IPI R L        EG  T+
Sbjct: 146 KNAGNNKITMKSKKEQNAEEDIVDPVEENETYDEFDTIRIPIVRSLSKSPPN-DEGIETD 204

Query: 228 LDRVRG 245
            DR +G
Sbjct: 205 SDRRKG 210


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 324 GFPSCLWTTATLPVTSETAAL 386
           G    LWT A+    SET AL
Sbjct: 294 GASDILWTQASAKAISETGAL 314


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = -3

Query: 179 STNRYLHEVVHTEVGYWGVWIQQVLICVVVWLRGGFPFFL 60
           S +RY+H       G W      V    VVWL  G   F+
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAGLISFV 159


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 401 STGPISKRCAADVARIVNASEGLVVAYGYSENSD 502
           +T PI+ RC  +  +I +     VVA G + N D
Sbjct: 365 ATLPITFRCLEENNKIDSRVTRFVVAVGATVNMD 398


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 60  EEKWEAASEPDY 95
           EE+WE  +E DY
Sbjct: 343 EEEWENENESDY 354


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 531 TKLTLEILMSSEFSEYP 481
           TK T+E + ++E+ E+P
Sbjct: 47  TKTTIEDVEATEYGEFP 63


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 251 SGYNVNEQFALVSKGHSKGKQIP 319
           S  N+++  A V + + +GK+IP
Sbjct: 238 SNINISQVIACVGQQNVEGKRIP 260


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 426 HRLLIGPVLMVT 391
           H+LLIGP + +T
Sbjct: 187 HKLLIGPSIRIT 198


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 348 TATLPVTSETAALKLLPSARGRSVSGALQTSPGLSTPP 461
           T TLP  S T      PSA   + +     + G +T P
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,258
Number of Sequences: 438
Number of extensions: 3858
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)