Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00696
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   150   5e-38
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    29   0.28 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   3.4  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   4.5  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    24   7.9  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  150 bits (364), Expect = 5e-38
 Identities = 69/84 (82%), Positives = 80/84 (95%)
 Frame = +2

Query: 2   RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
           RIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGPVR+PTKIL+ITTRKTP GEGSKTW+
Sbjct: 19  RIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWE 78

Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT 253
            ++MRIHKR+IDLHSPSEIVKQIT
Sbjct: 79  TYEMRIHKRLIDLHSPSEIVKQIT 102



 Score = 29.1 bits (62), Expect = 0.21
 Identities = 13/14 (92%), Positives = 14/14 (100%)
 Frame = +1

Query: 256 INIEPGVEVEVTIA 297
           I+IEPGVEVEVTIA
Sbjct: 104 IHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 86  KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 238
           K+ +KGP  +P K+   T  ++P    S + + F+   H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPAC23C4.19 |spt5||transcription elongation factor
            Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 97   KGPSPHANQDPAYHHP*NSLW*RFKDLGSFSDANPQESD 213
            K P+ +ANQ P   +  N+ W +    G FS+ N    D
Sbjct: 916  KTPAWNANQTPMVANGTNTSWGQTPAYGGFSETNWDTED 954


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 143 RKTPCGEGSKTWDRFQM 193
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 222 CRSITLLWIRI*KRSQVFEPSPQ 154
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,954
Number of Sequences: 5004
Number of extensions: 25054
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)