Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00696
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 141 2e-34
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 141 2e-34
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 140 4e-34
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 42 1e-04
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 1.4
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 1.4
01_05_0426 + 22042215-22042595,22044846-22045688 27 3.1
05_05_0026 + 21645845-21647404 27 5.5
03_06_0677 + 35476009-35476014,35476974-35477474,35477574-354777... 27 5.5
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 141 bits (341), Expect = 2e-34
Identities = 63/87 (72%), Positives = 78/87 (89%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWD
Sbjct: 30 RIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWD 89
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT*LT 262
RF+ RIHKRVIDL S ++VKQIT +T
Sbjct: 90 RFEFRIHKRVIDLISSPDVVKQITSIT 116
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 256 INIEPGVEVEVTIAD 300
I IEPGVEVEVTIAD
Sbjct: 115 ITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 141 bits (341), Expect = 2e-34
Identities = 63/87 (72%), Positives = 78/87 (89%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+PTK+L ITTRK+PCGEG+ TWD
Sbjct: 27 RIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWD 86
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT*LT 262
RF+ RIHKRVIDL S ++VKQIT +T
Sbjct: 87 RFEFRIHKRVIDLISSPDVVKQITSIT 113
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 256 INIEPGVEVEVTIAD 300
I IEPGVEVEVTIAD
Sbjct: 112 ITIEPGVEVEVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 140 bits (338), Expect = 4e-34
Identities = 61/87 (70%), Positives = 78/87 (89%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMPTK+L ITTRK+PCGEG+ TWD
Sbjct: 28 RIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMPTKVLHITTRKSPCGEGTNTWD 87
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT*LT 262
RF+MR+HKRVIDL S +++VKQIT +T
Sbjct: 88 RFEMRVHKRVIDLVSSADVVKQITSIT 114
Score = 29.9 bits (64), Expect = 0.59
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 256 INIEPGVEVEVTIAD 300
I IEPGVEVEVTI+D
Sbjct: 113 ITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 41.9 bits (94), Expect = 1e-04
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
+IRI L S V +E C +I AK + GPV +PTK +P +
Sbjct: 334 KIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF- 392
Query: 182 RFQMRIHKRVIDLHSPS 232
F++R H+R+ID+ P+
Sbjct: 393 HFEIRTHQRLIDIMYPT 409
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 4 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 132
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 31 CALTREGLC*PNQWSQETEAACKGPSP 111
C L EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +1
Query: 10 DHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 138
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
>05_05_0026 + 21645845-21647404
Length = 519
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 84 CFLAPLIRSAQTFSSERTL 28
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>03_06_0677 +
35476009-35476014,35476974-35477474,35477574-35477762,
35477925-35477945
Length = 238
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 61 PNQWSQETEAACKGPSPHANQDPAYHHP 144
PN +TEA K HA DPA P
Sbjct: 41 PNNHHGDTEALSKASPLHAGSDPAMRKP 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,316,731
Number of Sequences: 37544
Number of extensions: 188683
Number of successful extensions: 457
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -