Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00696
(352 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 163 1e-40
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 163 1e-40
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 163 1e-40
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 163 1e-40
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 111 5e-25
AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein. 29 4.1
M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein. 29 5.5
AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen pr... 29 5.5
AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen pr... 29 5.5
AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen pr... 29 5.5
AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1 p... 29 5.5
AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein. 28 7.2
AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-... 28 9.5
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 163 bits (397), Expect = 1e-40
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWD
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT 253
RFQMRIHKR+IDLHSPSEIVKQIT
Sbjct: 79 RFQMRIHKRLIDLHSPSEIVKQIT 102
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 256 INIEPGVEVEVTIADA 303
I+IEPGVEVEVTIADA
Sbjct: 104 ISIEPGVEVEVTIADA 119
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 163 bits (397), Expect = 1e-40
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWD
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT 253
RFQMRIHKR+IDLHSPSEIVKQIT
Sbjct: 79 RFQMRIHKRLIDLHSPSEIVKQIT 102
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 256 INIEPGVEVEVTIADA 303
I+IEPGVEVEVTIADA
Sbjct: 104 ISIEPGVEVEVTIADA 119
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 163 bits (397), Expect = 1e-40
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWD
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT 253
RFQMRIHKR+IDLHSPSEIVKQIT
Sbjct: 79 RFQMRIHKRLIDLHSPSEIVKQIT 102
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 256 INIEPGVEVEVTIADA 303
I+IEPGVEVEVTIADA
Sbjct: 104 ISIEPGVEVEVTIADA 119
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 163 bits (397), Expect = 1e-40
Identities = 76/84 (90%), Positives = 81/84 (96%)
Frame = +2
Query: 2 RIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWD 181
RIRITLTSRNV+SLEKVCADLI GAK++ L+VKGPVRMPTK LRITTRKTPCGEGSKTWD
Sbjct: 19 RIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWD 78
Query: 182 RFQMRIHKRVIDLHSPSEIVKQIT 253
RFQMRIHKR+IDLHSPSEIVKQIT
Sbjct: 79 RFQMRIHKRLIDLHSPSEIVKQIT 102
Score = 33.1 bits (72), Expect = 0.25
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 256 INIEPGVEVEVTIADA 303
I+IEPGVEVEVTIADA
Sbjct: 104 ISIEPGVEVEVTIADA 119
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 111 bits (268), Expect = 5e-25
Identities = 50/52 (96%), Positives = 51/52 (98%)
Frame = +2
Query: 98 KGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
KGPVRMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQIT
Sbjct: 1 KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQIT 52
>AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein.
Length = 3027
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 332 QKYFIGGSAYASAMVTSTSTPGSMLIR*SVSQFQRESVGRSLSCG 198
++YF+ GSA + + S ST G L+ VS+ R+S+ R++ G
Sbjct: 2940 EEYFVTGSAEGNIKIWSLSTFG--LLHTFVSEHARQSIFRNIGTG 2982
>M16276-1|AAA59823.1| 269|Homo sapiens HLA-DRB2 protein.
Length = 269
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 80 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY663414-1|AAU88032.1| 261|Homo sapiens MHC class II antigen
protein.
Length = 261
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 80 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375869-1|AAQ88043.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 80 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AY375868-1|AAQ88042.1| 234|Homo sapiens MHC class II antigen
protein.
Length = 234
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 80 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 4 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 60
>AF000447-1|AAB86436.1| 255|Homo sapiens MHC class II HLA-DQB1
protein.
Length = 255
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 80 KQKLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 253
K+ LR+ G +R PT L + TP EG + F ++ K + + +E V+ +T
Sbjct: 1 KKALRIPGGLRAPTVTLMLAMLSTPVAEGRDPPEDFVLQF-KAMCYFTNGTERVRYVT 57
>AB029009-1|BAA83038.1| 902|Homo sapiens KIAA1086 protein protein.
Length = 902
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 4 HQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPA 132
++D YF AL + + T+ AC PSPH + A
Sbjct: 65 YEDRPYFQSAALQSGRMTAADSGQPGTQEACGQPSPHGSHSHA 107
>AY211919-1|AAO65172.1| 253|Homo sapiens sarcoma antigen NY-SAR-48
protein.
Length = 253
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +2
Query: 68 NGAKKQKLRVKGPVRMPTKILRI---TTRKTPCGEGSKT 175
+ AKK+ RV+G + ++ L+ TT+K P G+GS+T
Sbjct: 24 SSAKKKDKRVQGGRVIESRYLQYEKKTTQKAPAGDGSQT 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,364,935
Number of Sequences: 237096
Number of extensions: 1082438
Number of successful extensions: 1848
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1848
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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