Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00695
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   117   1e-27
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   117   1e-27
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.5  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.3  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   9.9  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/86 (62%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           SHKAIRRDP+INWIVN VHKHRE RG
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRG 163



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQCRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y++EL +KK SDV  FL RVR W+ RQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 29/41 (70%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 164 LTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  117 bits (282), Expect = 1e-27
 Identities = 54/86 (62%), Positives = 61/86 (70%)
 Frame = +2

Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
           G TYGKP   GVN LK  R+ +  AEE            +SYWV QD++YK+FEVILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
           SHKAIRRDP+INWIVN VHKHRE RG
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRESRG 163



 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)
 Frame = +3

Query: 21  MGAYRYIQELYRKKLSDVMRFLLRVRVWQCRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
           MGAY+Y++EL +KK SDV  FL RVR W+ RQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
           LTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 164 LTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 331 TCWPSLRWSPCVELLLGCTG 390
           +C PS R  P +ELLL C+G
Sbjct: 595 SCGPSYRLLPKIELLLPCSG 614


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 386  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 490
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 508 LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 606
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,767,562
Number of Sequences: 5004
Number of extensions: 54303
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)