Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00695
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 109 1e-24
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 109 1e-24
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.003
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 29 2.6
01_01_0652 + 4975091-4975585 29 2.6
05_02_0037 + 5883285-5884292 29 4.5
05_03_0227 + 10655204-10655269,10656333-10656393,10656570-106566... 28 7.8
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 109 bits (263), Expect = 1e-24
Identities = 48/86 (55%), Positives = 59/86 (68%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
G YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+ILVD
Sbjct: 183 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 242
Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
+H AIR DP+INW+ VHKHRE+RG
Sbjct: 243 AHSAIRNDPRINWLCKPVHKHRELRG 268
Score = 83.4 bits (197), Expect = 1e-16
Identities = 37/56 (66%), Positives = 45/56 (80%)
Frame = +3
Query: 24 GAYRYIQELYRKKLSDVMRFLLRVRVWQCRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
GAY+Y+ EL+R+K SDVMRF+ RVR W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 162
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
LTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 269 LTSAGKKYRGLRGKGHTHHKARP-SRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 109 bits (263), Expect = 1e-24
Identities = 48/86 (55%), Positives = 59/86 (68%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVILVDP 430
G YGKPK G+ QLK RN +S+AEE +SYWV +DS+YKYFE+ILVD
Sbjct: 78 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 137
Query: 431 SHKAIRRDPKINWIVNAVHKHREMRG 508
+H AIR DP+INW+ VHKHRE+RG
Sbjct: 138 AHSAIRNDPRINWLCKPVHKHRELRG 163
Score = 85.4 bits (202), Expect = 4e-17
Identities = 38/57 (66%), Positives = 46/57 (80%)
Frame = +3
Query: 21 MGAYRYIQELYRKKLSDVMRFLLRVRVWQCRQLTRMHRAPRPTRPDKARRLGYRAKQ 191
MGAY+Y+ EL+R+K SDVMRF+ RVR W+ RQ + R RPTRPDKARRLGY+AKQ
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 57
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +1
Query: 508 LTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 630
LTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 164 LTSAGKKYRGLRGKGHTHHKARP-SRRATWKRNQTVSLRRYR 204
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.003
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 407 FEVILVDPSHKAIRRDPK 460
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 26.6 bits (56), Expect(2) = 0.003
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 251 GSTYGKPKSHGVNQLKPTRN 310
G Y KPK G+ QLK RN
Sbjct: 273 GIVYSKPKHQGITQLKFQRN 292
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 508 LTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 624
L GR + G G + +GG RR AW RR + R
Sbjct: 138 LVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 514 SAGRSSRGLGKGHRYSQTKGGSRRAAW 594
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>05_02_0037 + 5883285-5884292
Length = 335
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 104 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQ 235
AV ++ AP ++ +A +SP C R CC +P + WWP+
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPR 316
>05_03_0227 +
10655204-10655269,10656333-10656393,10656570-10656672,
10656768-10656870,10656951-10657004,10657124-10657186,
10657884-10658105,10658249-10658336,10658561-10658646,
10659003-10659110,10659201-10659245,10659511-10659601,
10659662-10659765
Length = 397
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 203 YNITLFSTVA*SSGFVRPCGPGSAVHTSQLTALPYPH 93
Y T++ +A G +RP P + + LTA PY H
Sbjct: 260 YQFTVYPFIAKYFGPIRPLRPTAILSVLLLTAYPYMH 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,241,001
Number of Sequences: 37544
Number of extensions: 412287
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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