Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00694X
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 142 2e-35
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 142 2e-35
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 142 2e-35
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 60 3e-10
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 50 3e-07
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 40 2e-04
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 29 0.42
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 28 0.74
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 27 1.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 26 3.0
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 3.0
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 5.2
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 5.2
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 5.2
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.9
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 6.9
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 25 9.1
SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p... 25 9.1
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 142 bits (345), Expect = 2e-35
Identities = 65/77 (84%), Positives = 69/77 (89%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I PPARPTDKPLRLPLQDVYKIGGIGTVP GRVETGV+KPG IV FAPA +TTEVKSVEM
Sbjct: 233 IEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEM 292
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L +PGDNVGFN
Sbjct: 293 HHESLDAGLPGDNVGFN 309
Score = 116 bits (280), Expect = 2e-27
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MP
Sbjct: 150 VAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPA-PLTSPCVFPCKTYTK 318
W++GWQ E K G GK L+EA+D S PA P P P + K
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAID-SIEPPARPTDKPLRLPLQDVYK 253
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 142 bits (345), Expect = 2e-35
Identities = 65/77 (84%), Positives = 69/77 (89%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I PPARPTDKPLRLPLQDVYKIGGIGTVP GRVETGV+KPG IV FAPA +TTEVKSVEM
Sbjct: 233 IEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEM 292
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L +PGDNVGFN
Sbjct: 293 HHESLDAGLPGDNVGFN 309
Score = 116 bits (280), Expect = 2e-27
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MP
Sbjct: 150 VAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPA-PLTSPCVFPCKTYTK 318
W++GWQ E K G GK L+EA+D S PA P P P + K
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAID-SIEPPARPTDKPLRLPLQDVYK 253
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 142 bits (345), Expect = 2e-35
Identities = 65/77 (84%), Positives = 69/77 (89%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I PPARPTDKPLRLPLQDVYKIGGIGTVP GRVETGV+KPG IV FAPA +TTEVKSVEM
Sbjct: 233 IEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEM 292
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L +PGDNVGFN
Sbjct: 293 HHESLDAGLPGDNVGFN 309
Score = 116 bits (280), Expect = 2e-27
Identities = 57/107 (53%), Positives = 73/107 (68%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MP
Sbjct: 150 VAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMP 207
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPA-PLTSPCVFPCKTYTK 318
W++GWQ E K G GK L+EA+D S PA P P P + K
Sbjct: 208 WYQGWQKETKAGVVKGKTLLEAID-SIEPPARPTDKPLRLPLQDVYK 253
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 59.7 bits (138), Expect = 3e-10
Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +3
Query: 264 PARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGT--IVVFAPANITTEVKSVEMH 437
P R TD P + ++DV+ I G GTV GRVE G LK G +V +++ T V +EM
Sbjct: 245 PERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMF 304
Query: 438 HEALQEAVPGDNVG 479
+ L AV GDN G
Sbjct: 305 KKQLDAAVAGDNCG 318
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 49.6 bits (113), Expect = 3e-07
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPST 171
V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S
Sbjct: 320 VSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSD 377
Query: 172 KMPWFKG 192
W+KG
Sbjct: 378 LYKWYKG 384
Score = 39.5 bits (88), Expect = 3e-04
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
++PP +P KPLRL + DVY+ TV GRVE G ++ ++ + VK+V
Sbjct: 394 LVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR 452
Query: 435 HHEALQE-AVPGDNV 476
+ + AV GD V
Sbjct: 453 NSDPSSTWAVAGDTV 467
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +3
Query: 270 RPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSV-EMHHEA 446
R + P +P+ YK +GT+ +G++E G +K + V+ P N T EV ++ + E
Sbjct: 463 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEE 520
Query: 447 LQEAVPGDNV 476
+ ++ GD V
Sbjct: 521 ISSSICGDQV 530
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 29.1 bits (62), Expect = 0.42
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -1
Query: 478 PTLSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVSTLPSGTVPIP 323
P +S +++ +S IS D+T + LA A + P ++ ++PS T+ IP
Sbjct: 236 PPVSTAASAYSSSLPIS-DVTRALPLAPASNSQHPSLSSQPVSVPSNTINIP 286
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 0.74
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Frame = +2
Query: 38 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 208
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 209 RKAKLTENASLKLSMHP----ATCP 271
++ + S + + ATCP
Sbjct: 205 SQSFSLRDPSARGGLRRYAIIATCP 229
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 281 VSGAGRWQDASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 138
V GAG S+ P+ LPS + P L E +ML CH
Sbjct: 543 VEGAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 249 RCILPPARPTDKPLRLPLQDVYKIGGI 329
RCI+P + T +P +PL V K G +
Sbjct: 1251 RCIIPRNQDTKQPCIVPLNVVQKSGAV 1277
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 3.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -3
Query: 329 NTTDFVYVLQGKTQGLVSGAGRWQDASRASMRHFPSALPSLRSTCHPLNQGILVEGSN 156
N + VY L K++G S A + ASR S P +R+ N +++ G+N
Sbjct: 361 NNSIEVYALDVKSEG--SAAPLTERASRISAIEIPGHRADVRTLALSANHDVILSGAN 416
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 241 EALDASCHLPAPLTSPC 291
E+L++ CH PAP S C
Sbjct: 122 ESLNSLCHSPAPSVSSC 138
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 418 TSVVMLAGAKTTMVPGFNTPVSTLPSGTVPIPPILYTSC 302
+SVV+ + +T V + + VST +GTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 16 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 186
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -1
Query: 436 CISTDLTSVVMLAGAKTTMVPGFNTPVSTLPSGTVP 329
C++T + L T NT +++ P+GT+P
Sbjct: 247 CVATFTSGYSPLVEPAFTFASALNTTLNSFPNGTLP 282
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 6.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 67 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 192
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 134 LDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENASLK 244
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 454 SWRASWCISTDLTSVVMLAGAKTTMVPGFNTPVST 350
SW SW +ST L +V + G T ST
Sbjct: 97 SWNPSWMVSTILVGLVSFMTSDEITTGGIVTSEST 131
>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 518 HNAILDGHXLYVETYIVSRYSFL 450
+N +LD H LY+ T I ++S L
Sbjct: 112 YNVLLDNHRLYLLTRIQKQFSTL 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,077
Number of Sequences: 5004
Number of extensions: 53089
Number of successful extensions: 213
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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