Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00694X
(526 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 1e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 146 1e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 146 1e-35
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 45 3e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 45 3e-05
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 43 2e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 43 2e-04
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 43 2e-04
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 43 2e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 35 0.041
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 35 0.041
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.38
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.38
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 31 0.67
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 31 0.67
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 30 0.88
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 1.5
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 1.5
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.5
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 1.5
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 1.5
AC093703-4|AAY55885.1| 345|Caenorhabditis elegans Hypothetical ... 27 6.2
U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical pr... 27 8.2
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 1e-35
Identities = 64/77 (83%), Positives = 71/77 (92%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I+PP RPTD+PLRLPLQDVYKIGGIGTVP GRVETG++KPG +V FAP N+TTEVKSVEM
Sbjct: 201 IIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEM 260
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L EAVPGDNVGFN
Sbjct: 261 HHESLPEAVPGDNVGFN 277
Score = 141 bits (341), Expect = 3e-34
Identities = 67/106 (63%), Positives = 75/106 (70%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MP
Sbjct: 116 VACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMP 175
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPAPLTSPCVFPCKTYTK 318
WFKGW VERKEG A GK L+EALD+ P P P + K
Sbjct: 176 WFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYK 221
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 146 bits (353), Expect = 1e-35
Identities = 64/77 (83%), Positives = 71/77 (92%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I+PP RPTD+PLRLPLQDVYKIGGIGTVP GRVETG++KPG +V FAP N+TTEVKSVEM
Sbjct: 235 IIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEM 294
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L EAVPGDNVGFN
Sbjct: 295 HHESLPEAVPGDNVGFN 311
Score = 141 bits (341), Expect = 3e-34
Identities = 67/106 (63%), Positives = 75/106 (70%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MP
Sbjct: 150 VACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMP 209
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPAPLTSPCVFPCKTYTK 318
WFKGW VERKEG A GK L+EALD+ P P P + K
Sbjct: 210 WFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYK 255
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 146 bits (353), Expect = 1e-35
Identities = 64/77 (83%), Positives = 71/77 (92%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I+PP RPTD+PLRLPLQDVYKIGGIGTVP GRVETG++KPG +V FAP N+TTEVKSVEM
Sbjct: 235 IIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEM 294
Query: 435 HHEALQEAVPGDNVGFN 485
HHE+L EAVPGDNVGFN
Sbjct: 295 HHESLPEAVPGDNVGFN 311
Score = 141 bits (341), Expect = 3e-34
Identities = 67/106 (63%), Positives = 75/106 (70%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MP
Sbjct: 150 VACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMP 209
Query: 181 WFKGWQVERKEGKADGKCLIEALDASCHLPAPLTSPCVFPCKTYTK 318
WFKGW VERKEG A GK L+EALD+ P P P + K
Sbjct: 210 WFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYK 255
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 45.2 bits (102), Expect = 3e-05
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 7 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KM 177
VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T +
Sbjct: 254 VNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEG 313
Query: 178 PWFKG 192
W+ G
Sbjct: 314 NWYSG 318
Score = 32.3 bits (70), Expect = 0.22
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +3
Query: 270 RPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEAL 449
R + P+R + + Y +GTV G++E+G ++ G +V P +V +
Sbjct: 334 RDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMPNKQPVQVLQIWADDVET 391
Query: 450 QEAVPGDNVGF 482
+ V GDN+ F
Sbjct: 392 ERVVAGDNIKF 402
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKM 177
V VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++
Sbjct: 313 VAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMEL 367
Query: 178 PWFKGWQVERKEGKADGKCLIEALDASCHLPAPLTSP 288
W+ DG CL+E +D+ P P
Sbjct: 368 DWY------------DGPCLLELIDSFVAPQPPSDGP 392
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 264 PARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 443
P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T +++
Sbjct: 385 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANND 443
Query: 444 ALQEAVPGDNV 476
+ GD +
Sbjct: 444 GSRHCFAGDYI 454
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = +1
Query: 1 VGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKM 177
V VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++
Sbjct: 331 VAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMEL 385
Query: 178 PWFKGWQVERKEGKADGKCLIEALDASCHLPAPLTSP 288
W+ DG CL+E +D+ P P
Sbjct: 386 DWY------------DGPCLLELIDSFVAPQPPSDGP 410
Score = 33.1 bits (72), Expect = 0.13
Identities = 17/71 (23%), Positives = 35/71 (49%)
Frame = +3
Query: 264 PARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 443
P P+D PLR+ + DV K+ V G++E+G ++ V+ +++T +++
Sbjct: 403 PQPPSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDD-KVYIMSSVTAATVKECANND 461
Query: 444 ALQEAVPGDNV 476
+ GD +
Sbjct: 462 GSRHCFAGDYI 472
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/63 (41%), Positives = 31/63 (49%)
Frame = +2
Query: 59 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 238
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 239 LKL 247
+L
Sbjct: 212 SRL 214
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +3
Query: 246 SRCILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPG-TIVVFAPANITTEVK 422
++ ++P + ++P+ + VY I G GTV G++E G+LK G I + T VK
Sbjct: 239 NKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVK 297
Query: 423 SV----EMHHEALQEAVPGDNVG 479
SV E + + +A PGD +G
Sbjct: 298 SVISGLESFRKTVDQAEPGDQLG 320
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +3
Query: 246 SRCILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPG-TIVVFAPANITTEVK 422
++ ++P + ++P+ + VY I G GTV G++E G+LK G I + T VK
Sbjct: 240 NKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVK 298
Query: 423 SV----EMHHEALQEAVPGDNVG 479
SV E + + +A PGD +G
Sbjct: 299 SVISGLESFRKTVDQAEPGDQLG 321
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Frame = +3
Query: 246 SRCILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPG-TIVVFAPANITTEVK 422
++ ++P + ++P+ + VY I G GTV G++E G+LK G I + T VK
Sbjct: 240 NKFVIPERKVNEEPM-FAAEHVYSIVGRGTVITGKLERGILKRGDKIEIVGGTKDGTTVK 298
Query: 423 SV----EMHHEALQEAVPGDNVG 479
SV E + + +A PGD +G
Sbjct: 299 SVISGLESFRKTVDQAEPGDQLG 321
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 34.7 bits (76), Expect = 0.041
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 435 HHEALQEAVPGDNVGF 482
+ + + G F
Sbjct: 251 WKQRVGQVAAGARAAF 266
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 34.7 bits (76), Expect = 0.041
Identities = 21/76 (27%), Positives = 32/76 (42%)
Frame = +3
Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
I P R + + + + I G GTV G V GVL+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 435 HHEALQEAVPGDNVGF 482
+ + + G F
Sbjct: 210 WKQRVGQVAAGARAAF 225
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.5 bits (68), Expect = 0.38
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 285 PLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPAN 404
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 412
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.5 bits (68), Expect = 0.38
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = +3
Query: 285 PLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPAN 404
P + D+Y + G+GT+ G + +G ++ I++ P +
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTS 411
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 30.7 bits (66), Expect = 0.67
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 264 PARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFA--PANITTEVKSVEMH 437
P R +P+ I G GTV G +E GVLK G V + T +++
Sbjct: 232 PDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVF 291
Query: 438 HEALQEAVPGDNVG 479
++++E GD+ G
Sbjct: 292 GKSVKEVRAGDHCG 305
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 30.7 bits (66), Expect = 0.67
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +3
Query: 264 PARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFA--PANITTEVKSVEMH 437
P R +P+ I G GTV G +E GVLK G V + T +++
Sbjct: 232 PDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTLQTTASDIQVF 291
Query: 438 HEALQEAVPGDNVG 479
++++E GD+ G
Sbjct: 292 GKSVKEVRAGDHCG 305
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 385 TMVPGFNTPVSTLPSGTVPIPPILYTSCRGRRRGLSVGRAGGRMHREL 242
++V G N + +P+ T P+ P + +S R +R S G MH+ L
Sbjct: 332 SLVEGLNGSPTPIPTVTDPVNPTVNSSTRRKRHSSSKSSNGKSMHQVL 379
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 77 PHTSRRLATTQLLSLSCPFLD 139
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 77 PHTSRRLATTQLLSLSCPFLD 139
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +3
Query: 369 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 470
KPGTI F P ITTE K H L+ + GD
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGD 389
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 77 PHTSRRLATTQLLSLSCPFLD 139
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 77 PHTSRRLATTQLLSLSCPFLD 139
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AC093703-4|AAY55885.1| 345|Caenorhabditis elegans Hypothetical
protein Y20F4.8 protein.
Length = 345
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 339 PDGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAV-PGDNV 476
PDG V++ ++K G +V P N+ +++ + + QE P D+V
Sbjct: 188 PDGEVQSVMVKMGKRIVEKPVNLLIPLENTGIRIQVAQEEEGPDDDV 234
>U97403-8|AAB52470.1| 720|Caenorhabditis elegans Hypothetical
protein T10E9.2 protein.
Length = 720
Score = 27.1 bits (57), Expect = 8.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 368 ETRYHCCLCPRQH 406
E ++ CCLCPR H
Sbjct: 346 EFKWRCCLCPRAH 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,726,752
Number of Sequences: 27780
Number of extensions: 315688
Number of successful extensions: 1057
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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