Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00694X
         (526 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   175   2e-46
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   175   2e-46
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   175   2e-46
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   163   7e-43
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    48   8e-08
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.7  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  175 bits (426), Expect = 2e-46
 Identities = 79/85 (92%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
           VGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMP
Sbjct: 77  VGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 136

Query: 181 WFKGWQVERKEGKADGKCLIEALDA 255
           WFKGW VERKEGK +GKCLIEALDA
Sbjct: 137 WFKGWTVERKEGKVEGKCLIEALDA 161



 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +3

Query: 255 ILPPARPTDK 284
           ILPP RPTDK
Sbjct: 162 ILPPTRPTDK 171


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  175 bits (426), Expect = 2e-46
 Identities = 79/85 (92%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
           VGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMP
Sbjct: 93  VGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 152

Query: 181 WFKGWQVERKEGKADGKCLIEALDA 255
           WFKGW VERKEGK +GKCLIEALDA
Sbjct: 153 WFKGWTVERKEGKVEGKCLIEALDA 177



 Score =  149 bits (361), Expect = 2e-38
 Identities = 69/77 (89%), Positives = 71/77 (92%)
 Frame = +3

Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
           ILPP RPTDK LRLPLQDVYKIGGIGTVP GRVETGVLKPG +V FAPA +TTEVKSVEM
Sbjct: 178 ILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEM 237

Query: 435 HHEALQEAVPGDNVGFN 485
           HHEALQEAVPGDNVGFN
Sbjct: 238 HHEALQEAVPGDNVGFN 254


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  175 bits (426), Expect = 2e-46
 Identities = 79/85 (92%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
           VGVNKMDSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMP
Sbjct: 150 VGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 209

Query: 181 WFKGWQVERKEGKADGKCLIEALDA 255
           WFKGW VERKEGK +GKCLIEALDA
Sbjct: 210 WFKGWTVERKEGKVEGKCLIEALDA 234



 Score =  149 bits (361), Expect = 2e-38
 Identities = 69/77 (89%), Positives = 71/77 (92%)
 Frame = +3

Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
           ILPP RPTDK LRLPLQDVYKIGGIGTVP GRVETGVLKPG +V FAPA +TTEVKSVEM
Sbjct: 235 ILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEM 294

Query: 435 HHEALQEAVPGDNVGFN 485
           HHEALQEAVPGDNVGFN
Sbjct: 295 HHEALQEAVPGDNVGFN 311


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  163 bits (397), Expect = 7e-43
 Identities = 73/85 (85%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMP 180
           VGVNKMD T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K P
Sbjct: 150 VGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTP 209

Query: 181 WFKGWQVERKEGKADGKCLIEALDA 255
           W+KGW+VERK+G ADGK LIEALDA
Sbjct: 210 WYKGWKVERKDGNADGKTLIEALDA 234



 Score =  144 bits (349), Expect = 5e-37
 Identities = 66/77 (85%), Positives = 71/77 (92%)
 Frame = +3

Query: 255 ILPPARPTDKPLRLPLQDVYKIGGIGTVPDGRVETGVLKPGTIVVFAPANITTEVKSVEM 434
           ILPP+RPTDK LRLPLQDVYKIGGIGTVP GRVETG+LKPG +V FAPA +TTEVKSVEM
Sbjct: 235 ILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEM 294

Query: 435 HHEALQEAVPGDNVGFN 485
           HHEAL EA+PGDNVGFN
Sbjct: 295 HHEALTEALPGDNVGFN 311



 Score = 21.8 bits (44), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 472 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 365
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 47.6 bits (108), Expect = 8e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +3

Query: 420 KSVEMHHEALQEAVPGDNVGFN 485
           KSVEMHHEAL EA+PGDNVGFN
Sbjct: 1   KSVEMHHEALTEALPGDNVGFN 22


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 174 FG*RLQHVVSVPSRNGHESDSSWV 103
           FG  L H++ V  +N   + + WV
Sbjct: 35  FGLSLHHIIDVDEKNQILTTNCWV 58


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 17  WIPLNHHTVSPDLRKSRRKY 76
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 241 EALDASCHLPAPLTSPCVFPCK 306
           + L+ S   P+P   P V PCK
Sbjct: 873 QPLNLSKKSPSPSPRPLVGPCK 894


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 69  LLDFLKSGLTVWWFSGIH 16
           L  F++SG+T  W S I+
Sbjct: 56  LSHFIESGITAIWLSPIN 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,226
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)