Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00693
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    27   1.8  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   2.4  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    27   3.2  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   3.2  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    26   5.6  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   9.8  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   9.8  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 357 LRTKAQAARSRAKNQATIPAYSIKTP 434
           LRTK + ++SRA+N+    A + KTP
Sbjct: 228 LRTKPKGSKSRARNERKFHAKTRKTP 253


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 268 ERQEGQGHNTDAYVISNAFEDIAQTLSPTYSGQRLKRLGVELRTKQQFQ 414
           +R +G GH       SN  +D+A  LS  ++G ++   G+E+   Q  +
Sbjct: 376 KRLQGHGHLVKD---SNWCQDLAPVLSEVWTGSKISSPGLEVNVLQDIE 421


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 TSAERRLSSTDSVLAMLKWVERHFSRRKP 245
           T  ER     DS  +++ W++ HF  R+P
Sbjct: 283 TKRERMTIPKDSFASVMDWLDEHFVVRRP 311


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/25 (40%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = -1

Query: 651 HSPLGVMWLLELIDIYNVN-APSKV 580
           ++ +G++W+ +L  IY+VN  PSK+
Sbjct: 147 YNAVGLLWITKLFHIYSVNWCPSKL 171


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 435 HGFFYTQILLVVGHLVSPHG*VPPPAYFCREAVMRFGLKGGAAGVTILRP*MAH 596
           +GF    + L+V  ++     +P   YF   ++M+FG   G+A +  L     H
Sbjct: 380 YGFMMGIVALIVHLVLDAVHKIPVQPYFVLYSIMQFGFSVGSAPLVSLATKQLH 433


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 187 PTLYWRC*SGSNATSRDASPERITNVQERQEGQGHNTDAYVISNAF 324
           P +   C S ++  +   S   +  +Q+R    GH+ D+   SN+F
Sbjct: 184 PLIKELCESANSTENVCFSVSTVDEIQQRHPSAGHSIDSTCQSNSF 229


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 365 CPEYVGESVWAMSSKAFDMTYASVLC 288
           CP++   S     +K FD  YA++ C
Sbjct: 14  CPQFAYGSYMVNRTKCFDSVYAALQC 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,233
Number of Sequences: 5004
Number of extensions: 57888
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)