Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00693
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0209 - 26786399-26786449,26786533-26786625,26786721-267868... 40 0.002
10_08_0872 - 21188197-21188247,21188361-21188453,21188549-211886... 40 0.002
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 36 0.038
04_04_0740 - 27699609-27699761,27699864-27700004,27700094-277001... 34 0.088
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 33 0.27
07_03_0404 + 17764811-17764954,17765048-17765188,17765277-177653... 31 0.82
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 30 1.9
06_01_0833 - 6288410-6288564,6289948-6290239,6290578-6290670,629... 29 2.5
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 5.8
03_05_0522 - 25161595-25162285,25162394-25163139 28 5.8
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 28 5.8
10_08_0445 + 17989438-17990895 28 7.7
09_03_0084 + 12198185-12198460,12198560-12198700,12198782-121991... 28 7.7
03_05_0249 - 22368986-22369627,22374000-22374890 28 7.7
>02_05_0209 -
26786399-26786449,26786533-26786625,26786721-26786861,
26786973-26787050,26787146-26787247,26787595-26787693,
26787804-26787875,26787964-26788104,26788222-26788503
Length = 352
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 6 SIYILRTAFGLDWSERIRIIYAGDDNTDEDAMLALKGMAATFRIVSSNIIK-TSAERRLS 182
++ L + GL+ SE + IY GDD TDEDA L+ + I+ S + K T A L
Sbjct: 273 AVEFLLQSLGLNDSENVIPIYIGDDRTDEDAFKVLRQRNCGYGILVSQVPKETEAFYSLR 332
Query: 183 STDSVLAMLKWVER 224
V+ L ++ R
Sbjct: 333 DPSEVMEFLNFLVR 346
>10_08_0872 -
21188197-21188247,21188361-21188453,21188549-21188689,
21188784-21188861,21188950-21189051,21189138-21189194,
21189280-21189408,21189507-21189578,21189667-21189807,
21189890-21190102
Length = 358
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 6 SIYILRTAFGLDWSERIRIIYAGDDNTDEDAMLALKGMAATFRIVSSNIIK-TSAERRLS 182
++ L + GL E + IY GDD TDEDA LK + F I+ S++ K T A +
Sbjct: 279 AVEFLLESLGLCGKEDVLPIYVGDDKTDEDAFKVLKANSIGFGILVSSVPKDTDAFYSVR 338
Query: 183 STDSVLAMLK 212
V+ LK
Sbjct: 339 DPAEVMEFLK 348
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 35.5 bits (78), Expect = 0.038
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 ASIYILRTAFGLDWSERIRIIYAGDDNTDEDAMLALKGMAATFRIVSSNIIK-TSAERRL 179
+++ L + G + + IY GDD TDEDA L+ M I+ + + K T+A L
Sbjct: 280 SALQFLLKSLGYEGRNNVFPIYIGDDRTDEDAFKVLRNMGQGIGILVTKVPKETAASYTL 339
Query: 180 SSTDSVLAMLK 212
V L+
Sbjct: 340 REPSEVKEFLR 350
>04_04_0740 -
27699609-27699761,27699864-27700004,27700094-27700171,
27700298-27700399,27700492-27700548,27700690-27700788,
27700896-27700967,27701062-27701202,27701281-27701413,
27701623-27701690,27701770-27701775
Length = 349
Score = 34.3 bits (75), Expect = 0.088
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +3
Query: 12 YILRTAFGLDWSERIRIIYAGDDNTDEDAMLALKGMAATFRIVSSNIIKTS 164
++LR+ LD SE + IY GDD TDEDA L+ I+ S + K S
Sbjct: 270 FLLRS-LELDDSETVLPIYIGDDKTDEDAFKVLRERKNGCGILVSQVPKKS 319
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 32.7 bits (71), Expect = 0.27
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 63 IYAGDDNTDEDAMLALKGMAATFRIVSSNIIK-TSAERRLSSTDSVLA-MLKWVE-RHFS 233
+Y GDD TDEDA L+ I+ S K T+A L V+ +L+ VE S
Sbjct: 305 VYIGDDRTDEDAFKVLRKRGQGIGILVSKYPKDTNASYSLQEPAEVMEFLLRLVEWERLS 364
Query: 234 RRKPR 248
R +P+
Sbjct: 365 RARPK 369
>07_03_0404 +
17764811-17764954,17765048-17765188,17765277-17765348,
17765460-17765588,17765705-17765761,17765831-17765932,
17766186-17766326,17766493-17766585,17766780-17766869
Length = 322
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 63 IYAGDDNTDEDAMLALKGMAATFRIVSSNIIKTS 164
IY GDD TDEDA L+ F I+ S++ K S
Sbjct: 249 IYIGDDCTDEDAFKVLRDDKRGFGILVSSVPKDS 282
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 63 IYAGDDNTDEDAMLALKGMAATFRIVSSNIIK-TSAERRLSSTDSVLAML 209
+Y GDD TDEDA L+ I+ S K T+A L V+ L
Sbjct: 287 VYIGDDRTDEDAFKVLRKRGQGLGILVSKCPKDTNASYSLQDPTEVMEFL 336
>06_01_0833 -
6288410-6288564,6289948-6290239,6290578-6290670,
6290784-6290857,6290976-6291045,6291140-6291217,
6291329-6291430,6291583-6291645,6291802-6291951,
6292037-6292180,6292266-6292499
Length = 484
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 6 SIYILRTAFGLDWSER-IRIIYAGDDNTDEDAMLALKGMAATFRIVSSNIIK 158
++ L + G D R + +Y GDD TDEDA L+ I+ S K
Sbjct: 272 AVEFLLKSLGFDDDRRDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCAK 323
>08_01_0321 +
2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 221 TPLLETQAQSESLTYKNARKARDTIQMHMSYQMPSKTSPRHSPPHTP 361
TP L +Q + + Y+ AR RD+ P TS R PH P
Sbjct: 381 TPSLPSQTIATTPGYQGARLTRDSRTRGARNSPPPPTSARRWRPHPP 427
>03_05_0522 - 25161595-25162285,25162394-25163139
Length = 478
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 408 IPAYSIKTPHGFFYTQILLVVGHLVSPH 491
+P++S K F Y Q L+V +VSPH
Sbjct: 132 LPSHSTKLDFWFLYNQGLIVFDPIVSPH 159
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 YILRTAFGLDWSERIRIIYAGDDNTDEDAML-ALKGMAATFRIVSSNIIKTSAERRLSST 188
YILR+A W+E + A + ++E A L+G+ +SS IIK ++S
Sbjct: 304 YILRSASIHAWTETLMEASAFANISEETAQDDKLQGLRGETPAISSPIIKKDVATQMSPD 363
Query: 189 DSV 197
DS+
Sbjct: 364 DSI 366
>10_08_0445 + 17989438-17990895
Length = 485
Score = 27.9 bits (59), Expect = 7.7
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +3
Query: 72 GDDNTDEDAMLALKGMAATFRIVSSN-IIKTSAERRLSSTDSVLAMLKWVERHFSRRKPR 248
G D+ D D M A+ +AA +V++ ++ T+ ++ S ++ A +R +R+
Sbjct: 89 GHDH-DHDDMFAVAAVAADLVVVAAAPVVTTTVAKKKPSREARAAKRSTTDRPRARKAAA 147
Query: 249 ANH*RTRTPGRPG 287
+ TP RPG
Sbjct: 148 SAASGETTPARPG 160
>09_03_0084 +
12198185-12198460,12198560-12198700,12198782-12199114,
12199197-12199344,12199424-12199494,12199709-12199801,
12200412-12200486,12200529-12200540
Length = 382
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +3
Query: 63 IYAGDDNTDEDAMLALKGMAATFRI-VSSNIIKTSAERRLSSTDSVLAMLKWVERHFSRR 239
+Y GDD TDEDA L+ I VS + +TSA L A LK H+
Sbjct: 310 VYIGDDRTDEDAFKVLRRRGQGVGILVSKHPKETSASFSLQEP----AELKKSSVHYPLP 365
Query: 240 KPRAN 254
R+N
Sbjct: 366 AQRSN 370
>03_05_0249 - 22368986-22369627,22374000-22374890
Length = 510
Score = 27.9 bits (59), Expect = 7.7
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Frame = +3
Query: 66 YAGDDNTDEDAMLALKGMAATFRIVSSNIIKTSAERRLSSTDSVLAMLKWVERHFS---- 233
Y G D D D + L G+ R+ +++ E TD+V +L+WV +
Sbjct: 265 YGGCDG-DGDFVDVLLGLEGEERLEEEDMVAVLWEMIFRGTDTVAILLEWVLARMALHPD 323
Query: 234 -RRKPRANH*RTRTPGRPGTQYRCICHIK-CLRRHRPDTL 347
+ K +A G C +K CLR H P L
Sbjct: 324 VQSKAQAEIDAAAVSGDAAALPYLHCVVKECLRMHPPGPL 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,403,990
Number of Sequences: 37544
Number of extensions: 460321
Number of successful extensions: 1239
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -