Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00693
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006661-2|AAK31542.1|  253|Caenorhabditis elegans Spliceosome-a...    30   1.7  
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AC006661-2|AAK31542.1|  253|Caenorhabditis elegans
           Spliceosome-associated proteinprotein 1 protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 152 HKNVGRTTFVLHRLCTGDA-EVGRTPLLETQAQSESLTYKNARKARDTIQMHMSYQMPSK 328
           HK+  R  +++++L T    +  R  L E +A  +    K+ +KARD IQ  +  + PS+
Sbjct: 127 HKDNYRM-YMIYKLPTVRVIDFNRVRLTEREAAKKMFKGKSGKKARDAIQKSVHTEDPSE 185

Query: 329 TSPRHS 346
             P  +
Sbjct: 186 IEPNEN 191


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +1

Query: 181 PPPTLYWRC*SGSNATSRDASPE-RITNVQERQEGQGHN-TDAYVISNAFE-DIAQTLSP 351
           PPP LY R            + + R   + E Q+    N T A   S++   D +Q +  
Sbjct: 286 PPPDLYQRMTQARTFLQNSLAKQLRDEGLTESQKAANRNQTGALSASSSIPFDASQIVKN 345

Query: 352 TYSGQRLKRLGVELRTK 402
           +Y+G  +  L  ++RTK
Sbjct: 346 SYNGDEVDHLVHQMRTK 362


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,218,584
Number of Sequences: 27780
Number of extensions: 348543
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)