Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00693
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.16 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 300 CICHIKCLRRHRP 338
           C+C  KC RRHRP
Sbjct: 104 CVCMRKCPRRHRP 116


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 336 PDTLPHILRTKAQAARSRA-----KNQATIPAYSIKTPHGFFYTQI 458
           P   P+ + ++ Q ++S       ++  T P  S++ PH F Y ++
Sbjct: 332 PRDFPYYMYSREQYSQSHLISNENRDFQTTPTVSVEQPHLFLYPEV 377


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 303 CICIVSLAFLAFLYVSDSLW 244
           C+ +V LAF +F+  +  LW
Sbjct: 387 CLTVVCLAFWSFIVSTILLW 406


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 266 KNARKARDTIQMHMSYQMPSKTSPRHSPPHT 358
           KNA  A + ++    Y++  +T P H+P  T
Sbjct: 35  KNAVCALNELKSGAVYKVVDQTGPTHAPIFT 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,538
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)