Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00692
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    31   0.14 
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   3.0  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   4.0  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    27   4.0  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   4.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.3  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -1

Query: 735 LCF*KSILFASKFNLLKSLYVSKIPPFIFSS---LIYALLFRRNLFSVQF 595
           +CF  S +F S F+ L  L ++ I P++ +S   LI AL +  NL ++ F
Sbjct: 387 VCFVVSCIFVSIFDTLTVLLLTWINPYVINSHTGLILALFYLTNLIALAF 436


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 599 WTENKFRRKRSAYISEEKMNGGILETYKLFNKLNLEANNIDFQK 730
           W E K  + RS ++   K +    + +  F K +LEA N D QK
Sbjct: 821 WLEKKADKARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQK 864


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
 Frame = +2

Query: 71  SVELAGMKIMYNHTLK*VEFPNISLSVTVHAGRIQRPTS--YCP----LLMSSYYTLQ 226
           S  LA ++I  NH     E+P + L++T+   R  +PTS   C     L +SS+Y +Q
Sbjct: 105 SENLALLQICLNHVN---EYPLVLLTLTIRLLRFSKPTSAITCSNDVILSLSSFYLIQ 159


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 207 DIRRGQYEVGLWIRPAWTVTESEIFGNSTYFNV 109
           D++RG  +V LW  P  T+ E   F N   F +
Sbjct: 325 DVKRGD-DVVLWGNPELTIEEVSTFSNENPFEI 356


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 557 GDLSRWIRGGKTLNWTENKFRRKRSAYISEEKMNGGILETYK 682
           G L+ W   G+T+ +  + F RK  AYI+ ++ +   L++ K
Sbjct: 22  GKLNDWRSKGRTVAFKLHPFLRKGLAYINNKEFDENTLKSDK 63


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 548  RIAGDLSRWIRGGKTLNW-TENKFRRKRSAYISEE 649
            +I   L++W+R  K  NW   +   RK + Y+S E
Sbjct: 1329 KIVDYLNKWLRMRKKRNWDRRSAIARKENRYMSVE 1363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,174,700
Number of Sequences: 5004
Number of extensions: 65710
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)