Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00692
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376           29   5.5  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    29   5.5  
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211...    29   5.5  
11_02_0141 + 8744928-8746187                                           28   7.3  
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467           28   7.3  

>10_02_0134 + 5667236-5669295,5669833-5669902,5670266-5670376
          Length = 746

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 67  EQCGISWYENNVQSHVKISGISEYFAFCHGPRRSNPET 180
           EQ G+ W+E ++   +   G S++       RRSN  T
Sbjct: 465 EQAGLQWWERDIDDDLDAKGRSKWSMMKSWSRRSNGST 502


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 163 RSNPETYLVLPSSNVFVLHSSNVPILRAE*TYFNFKLCDDII 288
           RSN +T +V+P+  +    S N P+  A      F L DDI+
Sbjct: 261 RSNVDTLIVIPNDKLLTAVSPNTPVTEA------FNLADDIL 296


>05_01_0273 +
           2115257-2115589,2115706-2115766,2115876-2115970,
           2116072-2116184,2116278-2116551,2116923-2117036,
           2117169-2117233,2117325-2117466,2117547-2117666,
           2118153-2118241,2118349-2118433
          Length = 496

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 370 ICQISVSWVANKIRAGCINRLLKPIENQ*CRR 275
           +C+++V W+ N++R      L+    NQ C R
Sbjct: 372 VCEMAVVWIENQLRENKTKELILNYANQLCER 403


>11_02_0141 + 8744928-8746187
          Length = 419

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 548 RIAGDLSRWIRGGKTLNWTENKFRRKRSAYISEEKMNGGI 667
           RI  ++S WIRG +  N    +F R R A +   + + G+
Sbjct: 257 RINAEVSEWIRGERGANAVAPEFVRGRDAVVWLRRFSDGV 296


>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
          Length = 734

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 630 LLFRRNLFSVQFKVLPPLIQRLRSPAILILSVWFTYIESRGLSCFG 493
           +L   +LF   F       ++ R PAIL  S+W  Y+ S  ++ +G
Sbjct: 12  VLVLTSLFLQCFLFFSATFRKHRIPAILRASIWLAYLGSDAVAIYG 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,911,423
Number of Sequences: 37544
Number of extensions: 364108
Number of successful extensions: 858
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)