Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00692
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   2.8  
Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical protein
            F18C5.3 protein.
          Length = 1490

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = -1

Query: 774  RSRDYHGCYAPDFLCF*KSILFASKFNLLKSLYVSKIPPFIFSSLIYALLFRRNLFSVQF 595
            RSRD+   +A  F+    S+L   KF+L     VS++ PF+   L         L S   
Sbjct: 864  RSRDH--VFAEFFVLLFSSLLKEKKFDLSDDSMVSRLNPFVKIILDCFDFKYEKLISCSM 921

Query: 594  KVLPPLIQRLRSPAI 550
            + L  +IQ ++ PAI
Sbjct: 922  RALSSMIQ-MQLPAI 935


>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -1

Query: 672 SKIPPFIFSSLIYALLFRRNLFSVQFKVLPP-LIQ--RLRSPAILILSVWFTYIESRGLS 502
           S IP FIF +L  A + R        +  P  L+Q   L + AI  +S+W   + +  +S
Sbjct: 140 SVIPFFIFYALCRAGMSREEQLVYVGRSYPEYLLQFSNLTNIAIYDISIWILIVCA--IS 197

Query: 501 CFGNRNCYLLFDHFLL 454
            FG  +C LLF +  +
Sbjct: 198 AFGGVSCILLFSYITI 213


>Z75554-4|CAA99957.2|  534|Caenorhabditis elegans Hypothetical
           protein ZC455.6a protein.
          Length = 534

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = -1

Query: 642 LIYALLFRRNLFSVQFKVLPPL--IQRLRSPAILILSVWFTYIESRGLSCFGNRNCYLLF 469
           LI+ LLF +N+ S  F V+ P+     ++S AI+   +         ++ F      L  
Sbjct: 8   LIFVLLFIKNVASYNFLVISPVYGFSHMKSMAIIANQLADA---GHQVTYFQPFVVELFK 64

Query: 468 DHFLLKNKNIE 436
           DH L+KN NIE
Sbjct: 65  DHDLIKNPNIE 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,254
Number of Sequences: 27780
Number of extensions: 357057
Number of successful extensions: 929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)