Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00691
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 28 1.6
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 27 2.2
SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1 |Schizosac... 27 2.9
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.9
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 3.8
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 27 3.8
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch... 26 6.6
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 8.7
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 540 PRGCCSASTGRRTTWCLSCSTAKWSRTSRTETDRSALRTNSATNITC-ATETGT 698
P G S++T RTT S T +RT+RT T R TN++ T +T GT
Sbjct: 137 PAGNHSSTTANRTT---STPTTTTARTTRT-TPRPTATTNTSNQSTSNSTRNGT 186
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 383 NTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNV 282
N S + V E S EAA +RL+ +V LR S N+
Sbjct: 668 NISVVCLVRESSDEAAKERLISLVPSLRISSENI 701
>SPAC26A3.01 |sxa1|SPAC2E1P5.06|aspartic protease Sxa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 609 WSRTSRTETDRSA--LRTNSATNITCATETGT 698
WS T + RS +RTN+ TN TC + T
Sbjct: 116 WSDTDGVDAGRSTSDIRTNACTNYTCFDYSST 147
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.1 bits (57), Expect = 2.9
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = -2
Query: 419 VIDASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSF---VNVSQ---ASVIVR 258
+I S G S +L ++ +EA RL+E+VE+L+N + V Q +S+I R
Sbjct: 997 LISFSNGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEEKIEVPQRCISSIIGR 1056
Query: 257 WASDR 243
S R
Sbjct: 1057 MGSTR 1061
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -2
Query: 437 VDAVFDVIDAS---QGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASV 267
V A++ DAS + + T +SLEAAH+ L +V ++ V++ S
Sbjct: 82 VPAIYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVSMQMISS 141
Query: 266 IVRW 255
++++
Sbjct: 142 VLKY 145
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -2
Query: 326 LVEVVEDLRNSFVNVSQASVIVRWASDRGVLHVTLVS 216
+ E + L + + +VS ++++WA +GV+ +T S
Sbjct: 207 VAEFTKSLESKY-HVSDTQILLKWAYSKGVIPITTTS 242
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +3
Query: 555 SASTGRRTTWCLSCSTAKWSRTSRTETDRSALRTNSATNITCATETGTRFTS*NLCTWSP 734
SAS TT+ ST+ S + T T S+ TNS+ T + + T N+ T P
Sbjct: 344 SASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNSTNSSIPTTYPSNSTTYQ---NITTSYP 400
Query: 735 WVSTV 749
W V
Sbjct: 401 WSQPV 405
>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 133 YNDIDWHTVTLTRN---GGHGK--LAVDSEMVGETSVTCNTPLSLA 255
YN + TVT T G + K + +DS+ V TS T TP++ A
Sbjct: 59 YNVLKPDTVTFTVTETAGSYAKRSIEIDSDSVSPTSATTTTPVASA 104
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +3
Query: 555 SASTGRRTTWCLSCSTAKWSRTSRTETDRSALRTNSATN 671
S+ T W + S SRT ETDRS L S N
Sbjct: 261 SSVTHENAAWSIPLSPGD-SRTHSAETDRSLLSAMSVRN 298
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,178
Number of Sequences: 5004
Number of extensions: 52611
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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