Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00691
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0609 + 22710442-22713502,22713596-22713948                       31   1.3  
05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365           29   3.9  
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195...    29   5.2  
02_01_0284 + 1907249-1907665,1907816-1907859,1909508-1909546,190...    29   5.2  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    28   9.1  
03_01_0497 - 3749706-3750160,3750688-3750811,3750904-3751040,375...    28   9.1  

>06_03_0609 + 22710442-22713502,22713596-22713948
          Length = 1137

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = +1

Query: 64  RDAKLHYMFNCGGETGVISSTHTYNDI--DWHTVTLTRNGGHGKLAVD--SE-MVGETSV 228
           RDA L +     G TGV++S +  + +  +WH VT +R      +A+D  SE ++G  S 
Sbjct: 35  RDALLCFKSQLSGPTGVLASWNNASLLPCNWHGVTCSRRAPRRVIAIDLPSEGIIGSISP 94

Query: 229 TCNTPLSLAHLTIT 270
                 SL  L ++
Sbjct: 95  CIANITSLTRLQLS 108


>05_01_0509 - 4250217-4250240,4250617-4250711,4251050-4251365
          Length = 144

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -3

Query: 169 VSESPCASLCRCKCASR-----ILRPSHRR 95
           +S  P  S+CRCKC SR     I  P HR+
Sbjct: 32  LSRLPVKSVCRCKCVSRRWRGLISDPDHRK 61


>04_04_0059 +
           22418795-22418908,22419064-22419202,22419437-22419525,
           22420428-22420690,22420793-22420883,22420966-22421325
          Length = 351

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 97  GGETGVISSTHTYNDIDWHTVTL 165
           GGETG+I    T    DWH + L
Sbjct: 287 GGETGIIKRKRTKEKPDWHLIWL 309


>02_01_0284 +
           1907249-1907665,1907816-1907859,1909508-1909546,
           1909791-1910112,1910803-1910892,1911541-1911609,
           1911969-1912074,1912146-1912234,1912349-1912461,
           1912555-1912657
          Length = 463

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = -2

Query: 476 LQIVAVCIVRCFEVDAVFDVIDASQGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDL 303
           +++    +V   E  A FDV   S+ ++     SHLLT     LEA H +++E ++D+
Sbjct: 322 MELELQALVALAEEIANFDVPSGSRKINGKYIQSHLLT----RLEAVHDKVMEQIKDV 375


>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = -2

Query: 320 EVVEDLRNSFVN-VSQASVIVRWASDRGVLHVTL-VSPTISESTAS 189
           E+VE++ +  +  +  +  IVRW++ +GV  +T  ++P +SE   S
Sbjct: 291 EIVEEIIDLLLTGLRDSDTIVRWSAAKGVGRITARLTPALSEEVLS 336


>03_01_0497 -
           3749706-3750160,3750688-3750811,3750904-3751040,
           3751143-3751278,3751366-3751626,3752334-3752398,
           3752473-3752530
          Length = 411

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
 Frame = -2

Query: 404 QGVHSVANTSHLLTVHEKSLEAAHKRLVEVVEDLRNSFVNVSQASVIVRWASD---RGVL 234
           +G H++AN +     ++  +      ++E +E L++S  N++   V +R  S+   +  +
Sbjct: 326 KGAHAIANIALQCICNDAKMRPRMSEVLEELEQLQDSKYNMASPQVDIRRTSNAVPKSPM 385

Query: 233 HVTLVSPTISESTASLP*PPFR 168
            +   SP  S   A+ P P +R
Sbjct: 386 RIQ-PSPRRSLGAAASPLPGYR 406


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,020
Number of Sequences: 37544
Number of extensions: 375656
Number of successful extensions: 1100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)