Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00690X
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    61   1e-10
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    30   0.18 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   3.8  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    26   3.8  
SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18 |Schizosa...    25   5.1  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   6.7  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.9  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.9  

>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
 Frame = +2

Query: 2   ILNRLHVAVPAPRDDKPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDD--YVLD 175
           +LNR+H+A PA RD+  RP  +P SV  ++   A   NR R L RDIE   G    Y ++
Sbjct: 357 VLNRIHLAEPAARDEVARPACIPDSVKTRRAYDANDPNR-RILARDIEAANGGAGVYNVE 415

Query: 176 LKKNYTEIPEDERYDVIPEIWEGHNIA 256
           L+  Y       +YD +PE+ +G N+A
Sbjct: 416 LRDKYILQDPSWKYDRMPELLDGKNVA 442



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 26/97 (26%), Positives = 39/97 (40%)
 Frame = +1

Query: 220 RHPGDLGGTQHRDYIDPDIFXXXXXXXXXXXXXXXGGMYAAPKIELDDTVREIRELDRQI 399
           R P  L G    D++DP+I                 G Y + +   D    E+ E   +I
Sbjct: 431 RMPELLDGKNVADFVDPEIEAKLLALDEEEERLEREGYYDSDQEIEDADEEEVLEKASRI 490

Query: 400 RNKKAILKDESRLVKQSTKPVMPRTSRAKTKQRSTSS 510
           R K  +    +R  K   +PV+PRT+  +T     SS
Sbjct: 491 REKNKLTMLAARQKKIKNRPVLPRTAGIRTLDELQSS 527


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 20/49 (40%), Positives = 27/49 (55%)
 Frame = +2

Query: 89  KEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYDVIPEI 235
           KEK  EKEN    LE +++     DY   LKK  T + E+E+  +I EI
Sbjct: 406 KEKYREKENNLELLETNLKTH-HKDYKHALKKRITAL-EEEKNRLIKEI 452


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +2

Query: 47  KPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDER 214
           K + P    SV+  + K  +KEN    LER    ++ D  +L   +N   + E ER
Sbjct: 261 KEKQPEEEVSVVGDELKSFDKENNDEHLERVTNDKIADASMLQKAEN--NVSEQER 314


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 80  LAKKEKQAEKENRKRKLERDIEVE--LGDDYVLDLKKNYTEIPE 205
           + KK K  E+E R+R+ ER  E +   G + + ++ K+ T++ E
Sbjct: 183 IRKKWKVIEREVRRRRAERAAEAQRVAGKEQLANILKHSTDLLE 226


>SPCP1E11.07c |cwf18||complexed with Cdc5 protein Cwf18
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 26  VPAPRDDKPRPPVLPPSVLAKKEKQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPE 205
           V AP+     PP +  SV A  ++  EK  RK + +  + VE  D   L  KK   ++  
Sbjct: 48  VQAPKMGFVEPPNMIESVEALSKEIEEKTKRKIEEQSSVPVEELDLVTLRPKKPTWDLER 107

Query: 206 D 208
           D
Sbjct: 108 D 108


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 71  PSVLAKKEKQAEKENRKRKL 130
           PSV  +KEK AE+  R+ +L
Sbjct: 178 PSVTEEKEKNAEQNKRRERL 197


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 83  AKKEKQAEKENRKRKLERD 139
           AKKEKQ +KE + +K ++D
Sbjct: 244 AKKEKQNKKEKKDKKDKKD 262


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 95  KQAEKENRKRKLERDIEVELGDDYVLDLKKNYTEIPEDERYD 220
           K  E+E      +R IE E  +D + +   +++E  E+E YD
Sbjct: 57  KNPERELNSDGTDRIIEEEEEEDDIENEASSFSEQSENENYD 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,402,038
Number of Sequences: 5004
Number of extensions: 25162
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)