Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00689
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   4.7  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   4.7  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   4.7  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 456  NSGAY*THYIIKLNRIHVSCFFNLFNPINSLIVLVD 349
            N+G Y T   IK++   + CF +L+N + S I  +D
Sbjct: 1504 NNGLYPT---IKVDDFLIDCFMSLYNEVKSSISPLD 1536


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 324 YRNRTNLRSLLKQSESLSD*TN*KSMKHGFD*V*LYSVFNK 446
           Y+  T L+ LLKQ+ES S+    ++ K   D   L SVF +
Sbjct: 673 YQKNTELQQLLKQNESASELLKSRNEKLCVDYDKLRSVFEE 713


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   CNIKNMSTIYPIRGWTDVT 58
           C +K++   Y I GW D T
Sbjct: 402 CKVKHLERTYEISGWNDST 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,292
Number of Sequences: 5004
Number of extensions: 35177
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)