Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00687X
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   101   1e-22
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   101   1e-22
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    27   1.5  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   5.9  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   7.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.7  
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    25   7.7  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  101 bits (241), Expect = 1e-22
 Identities = 48/83 (57%), Positives = 54/83 (65%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSTAEAXXXXXXXXXXXXXXYWVAQDSS*KYFGVILVDP 435
           G TYGKP   GVN LK  R+ + TAE               YWV QD++ K+F VILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 436 SHKAIRRDPKINWIVNAVHNHRE 504
           SHKAIRRDP+INWIVN VH HRE
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRE 160



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 35.1 bits (77), Expect = 0.007
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +3

Query: 510 GLTSAGRSSRGLGKGHRYS 566
           GLTS G+ SRG+GKGHR++
Sbjct: 163 GLTSIGKKSRGIGKGHRFN 181


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  101 bits (241), Expect = 1e-22
 Identities = 48/83 (57%), Positives = 54/83 (65%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSTAEAXXXXXXXXXXXXXXYWVAQDSS*KYFGVILVDP 435
           G TYGKP   GVN LK  R+ + TAE               YWV QD++ K+F VILVDP
Sbjct: 78  GQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYWVNQDATYKFFEVILVDP 137

Query: 436 SHKAIRRDPKINWIVNAVHNHRE 504
           SHKAIRRDP+INWIVN VH HRE
Sbjct: 138 SHKAIRRDPRINWIVNPVHKHRE 160



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 39/57 (68%), Positives = 48/57 (84%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y++EL +KK SDV  FL RVR W+YRQ+  +HRA RP+RPDKARRLGY+AKQ
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQ 57



 Score = 36.7 bits (81), Expect = 0.002
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +3

Query: 510 GLTSAGRSSRGLGKGHRYS 566
           GLTS G+ SRG+GKGHRY+
Sbjct: 163 GLTSIGKKSRGIGKGHRYN 181


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -3

Query: 289 HHGSWACHKWHPSNWTL 239
           H G  +C  W P NWTL
Sbjct: 243 HDGDISCMAWSPINWTL 259


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 374 ALTGLHKILHRSISELSSWTRHTRPFVAILRSTGS*MLYIII 499
           A   L+KIL  S  ++ ++T H  P V ++ S     LYI +
Sbjct: 43  ASNDLYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 92  LRVRVWQYRQLTRMHRAPRPTRPD 163
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 348 SLRWSPCVELLLGCTRFF 401
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -1

Query: 336 CLSSGLKVARGLQLVDTMALGLAI 265
           C   GL VA G Q  DT+ LG+ I
Sbjct: 89  CGYGGLTVALGPQFPDTLVLGMEI 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,452
Number of Sequences: 5004
Number of extensions: 47415
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)