Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00687X
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493...    90   1e-18
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390...    90   1e-18
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687     29   0.013
12_02_1111 - 26157796-26160330                                         30   1.1  
05_02_0037 + 5883285-5884292                                           29   3.4  

>05_03_0257 +
           11145558-11145876,11148181-11148347,11149114-11149311,
           11149405-11149650
          Length = 309

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSTAEAXXXXXXXXXXXXXXYWVAQDSS*KYFGVILVDP 435
           G  YGKPK  G+ QLK  RN +S AE               YWV +DS+ KYF +ILVD 
Sbjct: 183 GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 242

Query: 436 SHKAIRRDPKINWIVNAVHNHREM 507
           +H AIR DP+INW+   VH HRE+
Sbjct: 243 AHSAIRNDPRINWLCKPVHKHREL 266



 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 38/56 (67%), Positives = 46/56 (82%)
 Frame = +2

Query: 29  GAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           GAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 162



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 510 GLTSAGRSSRGL-GKGHRY 563
           GLTSAG+  RGL GKGH +
Sbjct: 268 GLTSAGKKYRGLRGKGHTH 286


>03_05_0228 -
           22137771-22138016,22138109-22138306,22138852-22139018,
           22139129-22139132
          Length = 204

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 41/84 (48%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRNLQSTAEAXXXXXXXXXXXXXXYWVAQDSS*KYFGVILVDP 435
           G  YGKPK  G+ QLK  RN +S AE               YWV +DS+ KYF +ILVD 
Sbjct: 78  GIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDV 137

Query: 436 SHKAIRRDPKINWIVNAVHNHREM 507
           +H AIR DP+INW+   VH HRE+
Sbjct: 138 AHSAIRNDPRINWLCKPVHKHREL 161



 Score = 89.0 bits (211), Expect = 2e-18
 Identities = 39/57 (68%), Positives = 47/57 (82%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y+ EL+R+K SDVMRF+ RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQ 57



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = +3

Query: 510 GLTSAGRSSRGL-GKGHRY 563
           GLTSAG+  RGL GKGH +
Sbjct: 163 GLTSAGKKYRGLRGKGHTH 181


>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
          Length = 353

 Score = 28.7 bits (61), Expect(2) = 0.013
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 412 FGVILVDPSHKAIRRDPK 465
           F +ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316



 Score = 27.1 bits (57), Expect(2) = 0.013
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 256 GATYGKPKSHGVNQLKPTRN 315
           G  Y KPK  G+ QLK  RN
Sbjct: 273 GIVYSKPKHQGITQLKFQRN 292


>12_02_1111 - 26157796-26160330
          Length = 844

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = +3

Query: 207 YSESVCDVVAASVQLLGCHLWQAQEP 284
           Y++ VC+V+  +V++ G + W+A++P
Sbjct: 480 YAQLVCEVILPAVRISGTNSWEARDP 505


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 109 AVPSVDSYAPRSQAHKAGQSPKTRLP---C*TRLCCIQNPCATWWPQ 240
           AV   ++ AP ++  +A +SP        C  R CC  +P + WWP+
Sbjct: 271 AVFPTEAAAPATEGKEAAKSPDAAAQGGWCLFR-CCWPSPPSVWWPR 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,658,211
Number of Sequences: 37544
Number of extensions: 355453
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)