Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00687X
         (567 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   100   8e-22
AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical...    29   1.8  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  100 bits (239), Expect = 8e-22
 Identities = 41/57 (71%), Positives = 51/57 (89%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 196
           MGAY+Y+QE++RKK SD +R+LLR+R W YRQL+ +HR PRPTRP+KARRLGYRAKQ
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQ 57



 Score = 97.1 bits (231), Expect = 8e-21
 Identities = 42/85 (49%), Positives = 54/85 (63%)
 Frame = +1

Query: 250 C*GATYGKPKSHGVNQLKPTRNLQSTAEAXXXXXXXXXXXXXXYWVAQDSS*KYFGVILV 429
           C G TYGKPK+HGVN+LK  ++ Q+ AE               YWVA+DS+ K++ V+L+
Sbjct: 76  CKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYWVAEDSTYKFYEVVLI 135

Query: 430 DPSHKAIRRDPKINWIVNAVHNHRE 504
           DP HKAIRR+P   WI   VH HRE
Sbjct: 136 DPFHKAIRRNPDTQWITKPVHKHRE 160



 Score = 36.3 bits (80), Expect = 0.015
 Identities = 16/19 (84%), Positives = 17/19 (89%)
 Frame = +3

Query: 510 GLTSAGRSSRGLGKGHRYS 566
           GLTSAGR SRGLGKG R+S
Sbjct: 163 GLTSAGRKSRGLGKGWRFS 181


>AL117202-13|CAB55075.1|  580|Caenorhabditis elegans Hypothetical
           protein Y47D3A.16 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -3

Query: 175 SSGFVRPCGPGSAVHTS---QLTVLPYPHTQQKTHNIAQFFPIQLLNISVGTH 26
           S+   RP   GS+  T       V+  PHT   T N    F + LLN+S+  H
Sbjct: 526 STTTTRPSNVGSSASTPIPLPKRVIKLPHTHTSTQNAQYSFMLLLLNVSLFFH 578


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 148
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 50  ELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPR 148
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,436,276
Number of Sequences: 27780
Number of extensions: 281009
Number of successful extensions: 653
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)