Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00685
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   2.9  
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce...    27   2.9  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    26   5.0  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   8.7  

>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 333 RCKGSHKEFKKCIRNKQVSKEKS 401
           RCKG+ K+FK C+  K  + E++
Sbjct: 64  RCKGNFKDFKWCLSTKSKAHEEA 86


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
 Frame = +1

Query: 328 DEDVKEVTKNLKNVSVTNKSQKK----KADVTSEDESDSE 435
           +E  KEV KNL+N S+T K+ ++    +A+ TS D+S SE
Sbjct: 33  EEREKEVLKNLQN-SLTGKTAEENLNDEANHTSSDKSKSE 71


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 545 R*KTDPEESCTRKERNHRKKRQESQKKEG 631
           R KT  E+   +KER   +K+Q+  KK+G
Sbjct: 176 RVKTKKEKEREKKEREKLRKKQQQAKKKG 204


>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 551 KTDPEESCTRKERNHRKKRQESQKKEG 631
           K + +E+  RK  N  KKR++ QKKEG
Sbjct: 343 KKEQDENVRRKREN--KKRRKDQKKEG 367


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 331 EDVKEVTKNLKNVSVTNKSQKKKADVTSED 420
           E ++  TK ++N+   +K +KKK + +S+D
Sbjct: 68  ETIESDTKEVQNIKPKSKKKKKKLNDSSDD 97


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 481 SVFSLLEIEVTSPHLKHLCRLKMKN 555
           ++ +L E+ +T PHL H C L +++
Sbjct: 327 AIRTLNELAMTRPHLVHSCNLNIES 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,552
Number of Sequences: 5004
Number of extensions: 30516
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)