Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00685
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    30   2.3  
03_05_1151 - 30763140-30763240,30764074-30764618,30764651-30764817     28   6.9  
08_02_0112 + 12703687-12703915,12704182-12704209,12704999-127050...    28   9.1  

>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSEQE 441
           DEDVK+     K V      +   +D +SE++SD E +
Sbjct: 379 DEDVKQKQTQAKKVQAPVAQESSSSDESSEEDSDMESD 416



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +1

Query: 187 KPLKRATAILKRQISAMRTGSERKKIVDSDXXXXXXXXXXXXXXXXIDEDVKEVTKNLKN 366
           +P+K+  A LK+ ++    GS++   V++D                 DED K+    +K 
Sbjct: 154 EPVKKPAAPLKKPVALATNGSKK---VETDSSSSDSSSDEES-----DEDDKKTAAPVKK 205

Query: 367 VSVTNKSQKKKADVTSEDESDSEQE 441
            SV    +K +   +S+ +SDSE +
Sbjct: 206 PSVAAIQKKTQESDSSDSDSDSESD 230


>03_05_1151 - 30763140-30763240,30764074-30764618,30764651-30764817
          Length = 270

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 139 RYWISIWVKQKRARRIKPLKRATAILKRQISAMRTGSE 252
           R+W S W+  +R + + PL    AI K +   +R G E
Sbjct: 118 RFWSSAWIDGRRPKDLMPL--VYAISKNRKKTLRQGKE 153


>08_02_0112 +
           12703687-12703915,12704182-12704209,12704999-12705050,
           12707604-12707672,12707764-12707889,12708206-12708256,
           12709763-12709840,12710613-12710715,12710794-12710828,
           12710916-12711362
          Length = 405

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSEQE 441
           +ED KE  +  K  + T+K   KKA  +SE   D + +
Sbjct: 322 EEDTKESKRGRKQPAKTSKGSWKKAHHSSEGSGDDDSD 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,408
Number of Sequences: 37544
Number of extensions: 176758
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)