Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00685
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.57 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +3

Query: 72   SHDRNRKIRNN----RTL*HWDCDLIKILDINMGKAKKGKKNQTTEE 200
            +HD+N    N+      +   +CD  ++++ N G   +GK   TTEE
Sbjct: 1866 NHDQNNSSFNDSKESNEISEAECDRDQLVNRNYGVNARGKDGMTTEE 1912


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 221 RFNIAVALFSGLILLALFCFTHID 150
           +++    LFSG++    +C  H D
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTD 429


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 633 HPSFFWLSCLFFRWFLSFLVQLSSGSVF 550
           HP++ W   L  +W   F V   SG VF
Sbjct: 259 HPTYDWFEKLELKW---FAVPAVSGMVF 283


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 221 RFNIAVALFSGLILLALFCFTHID 150
           +++    LFSG++    +C  H D
Sbjct: 406 KYDCVTLLFSGIVGFGAYCAAHTD 429


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 606 LFFRWFLSFLVQLSSGSVFHLQT 538
           L F W  S +  L    VFHL+T
Sbjct: 157 LSFAWIGSVVCSLPQTIVFHLET 179


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,499
Number of Sequences: 438
Number of extensions: 1964
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)