Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00682
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   5.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   6.6  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   6.6  

>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 64  LKCLSLFNYSTRYSKVGSVFLECVISLCD 150
           L C S F+Y+  +S    V L CV   C+
Sbjct: 583 LSCYSFFDYNYTFSSALVVLLHCVTEPCE 611


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 274 YLHSNLKPYFKIINEYKNL*KS**TQRAVASQSIYYIFGSCS 149
           + H++L P   ++  YK + K+   Q    + SIY I  +CS
Sbjct: 433 FTHADLHPGNVLVKFYKGIPKTIFNQDNEINDSIYKILSTCS 474


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +2

Query: 425 NDFLSNFWIVVHFFFKILMILLRCAVLCFYI 517
           +D L +  + +H F+  L++ + C ++ FY+
Sbjct: 605 SDLLFHSNVSLHLFYHYLIVKVSCPIMFFYL 635


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 540 TSLFHIDNI*KHNTAQRNRIMSILKKKCTTIQK 442
           TSLF    + K N A +NR  S +K   + I+K
Sbjct: 222 TSLFKKGFLFKKNNAMQNRTTSNIKSNASAIEK 254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,516
Number of Sequences: 5004
Number of extensions: 43390
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)