Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00682
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588...    29   3.0  
01_01_0560 + 4117203-4117458,4119359-4119609,4119691-4119860,412...    29   3.9  
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275...    28   5.2  
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252...    28   5.2  
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773...    28   5.2  
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688...    28   6.8  

>07_01_0766 -
           5885207-5885791,5885874-5886224,5886252-5886269,
           5886339-5886541,5886632-5886890,5887052-5887264,
           5887357-5887482,5887590-5887727,5887817-5888162,
           5888254-5888520,5888983-5889172,5889264-5889363,
           5889444-5889694,5889990-5890182,5890313-5890336
          Length = 1087

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 332 THYYITGLPLRIYRELCDACLCIFKFFFLRVNDFLSNFWIVVHF 463
           T Y +T +PL IY  L   CL   KF    +++F S  W +  F
Sbjct: 864 TIYPLTSIPLLIYCVLPAICLLTGKFIIPEISNFAS-IWFISLF 906


>01_01_0560 +
           4117203-4117458,4119359-4119609,4119691-4119860,
           4120188-4120385,4120922-4121081
          Length = 344

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 519 NI*KHNTAQRNRIMSILKKKCTTIQKLLRKSFTRRKKNLKIHKHASQ 379
           N+ K  T     ++  LK +  +  K  ++  T R +NLK+H++  Q
Sbjct: 133 NLSKDTTNHSTTVVDNLKNRLMSATKEFKEVLTMRTENLKVHENRRQ 179


>09_04_0160 +
           15226762-15227032,15227138-15227373,15227469-15227565,
           15227657-15227783,15227870-15228482,15228572-15228835,
           15228918-15229130,15229253-15229460,15229552-15229748,
           15229830-15230183,15230287-15230874
          Length = 1055

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +2

Query: 332 THYYITGLPLRIYRELCDACLCIFKFFFLRVNDFLSNFWIVV 457
           T Y  T LPL  Y  L   CL   KF    ++ F S F+I +
Sbjct: 831 TIYPFTSLPLLAYCTLPAVCLLTGKFIMPPISTFASLFFIAL 872


>09_04_0072 + 14323449-14324274,14324351-14324447,14325175-14325277,
            14325359-14325412,14325495-14325569,14325597-14325650,
            14325687-14325755,14325840-14325923,14326115-14326312,
            14326428-14326927,14327011-14327140,14328226-14328317,
            14328776-14328954,14329114-14329316,14329398-14329499,
            14330047-14330209,14330690-14330979,14331088-14331225,
            14331311-14331390,14331510-14331606,14331685-14331814,
            14331921-14332162
          Length = 1301

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 64   LKCLSLFNYSTRYSKVGSVFLECVISLCDYSCQICNKSTD*LRRVVF 204
            ++CL LF  ST Y ++ +   +  +SLC  +C+I +K    L  V F
Sbjct: 1157 VQCLGLF--STHYHRLAAENKDSKVSLCHMACEI-SKGEGGLEEVTF 1200


>07_01_0917 +
           7735696-7735896,7735907-7736404,7736481-7736813,
           7736991-7737314,7737367-7737836,7738165-7738447,
           7738527-7738640
          Length = 740

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 349 SNVIMCKLIIYYFVTLLNAKALSYYYLHSNLKP 251
           +N++ C  + ++ + ++  K  S +YL+SN+KP
Sbjct: 601 TNLLKCYSLQHWILLVITLKWSSVHYLNSNIKP 633


>03_06_0389 -
           33567385-33567969,33568052-33568402,33568646-33568848,
           33569044-33569299,33569459-33569671,33569757-33569882,
           33569965-33570102,33570191-33570536,33570630-33570896,
           33571192-33571378,33571457-33571556,33571659-33571909,
           33572242-33572428,33572562-33572573
          Length = 1073

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 332 THYYITGLPLRIYRELCDACLCIFKFFFLRVNDFLSNFWIVVHF 463
           T Y +T +PL +Y  L   CL   KF    +++F S  W +  F
Sbjct: 850 TIYPLTSIPLLLYCILPAICLLTGKFIIPEISNFAS-IWFISLF 892


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,337,604
Number of Sequences: 37544
Number of extensions: 205240
Number of successful extensions: 372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)