Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00682
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine rece...    28   4.6  
Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    27   8.1  
AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z73975-1|CAA98276.1|  282|Caenorhabditis elegans Hypothetical
           protein T06E8.1 protein.
          Length = 282

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 434 LSNFW-IVVHFFFKILMILLRCAVLCFYIL 520
           + NFW IVV F   IL IL   + +C Y +
Sbjct: 1   MENFWSIVVFFLLSILFILYNISTVCHYYM 30


>U23179-4|AAK68209.1|  341|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 3 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 340 IMCKLIIYYFVTLLNAKALSYYYLHSNLKPYF 245
           + C LI+Y+   LL + AL + + +  L P+F
Sbjct: 56  LKCLLIVYFICNLLFSMALCFAFFYQFLIPFF 87


>Z81533-2|CAB04342.1|  432|Caenorhabditis elegans Hypothetical
           protein F36G9.3 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 368 YRELCDACLCIFKFF--FLRVNDFLSNFWIVVHFFFKILMILLRCAVLCFYIL 520
           Y E       IFKFF   L    F+ +  I +++   IL I    A++CF+I+
Sbjct: 361 YPEKSAQAFAIFKFFESLLSCFTFIFSSLISLYWVLTILSIFSILALICFFIV 413


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
            protein C52B9.8 protein.
          Length = 1336

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 447  QKLLRKSFTRRKKNLKIHKHASQSSL*IRKGRPV 346
            +K  R S    +K  K HKH S S+L +R+G P+
Sbjct: 1142 KKKHRDSDESSEKKKKKHKHDSDSALKLREGSPL 1175


>AC006684-11|AAF39968.1|  550|Caenorhabditis elegans Hypothetical
           protein T02H6.1a protein.
          Length = 550

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 495 QRNRIMSILKKKCTTIQKLLRKSFTRRKKNLK 400
           + NR+M++ KKK     K  RKS+ RRKK L+
Sbjct: 484 ESNRVMNLKKKK-----KSWRKSWKRRKKKLR 510


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,327,552
Number of Sequences: 27780
Number of extensions: 241125
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)