Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00682
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.2  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   4.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 325 IIYYFVTLLNAKALSYYYLHSN 260
           + Y+F  L  ++ ++YY ++SN
Sbjct: 440 VFYWFAYLSRSERINYYNVNSN 461


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 507 VSIYCLCETNLFIIYVKNNV 566
           V +YC C    F I  KNNV
Sbjct: 59  VQLYCECILKNFNILDKNNV 78


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 456 TTIQKLLRKSFTRRKK 409
           TT+Q+LLR++  RR +
Sbjct: 165 TTVQQLLRRAQIRRNE 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,651
Number of Sequences: 438
Number of extensions: 3194
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)