Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00681
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    28   1.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.2  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   1.2  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    26   4.7  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   6.2  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 67  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVD*WGEGKVTNLDKIRGFPRSYNVN 246
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN 370


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 238 NVNEQLRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQ 411
           N N    +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S      
Sbjct: 161 NSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSS 220

Query: 412 TSPGLST 432
             P  ST
Sbjct: 221 PLPTTST 227


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +1

Query: 67  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVD*WGEGKVTNLDKIRGFPRSYNVN 246
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN 370


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 26/84 (30%), Positives = 33/84 (39%)
 Frame = +1

Query: 283 ESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKTRRCLRI 462
           E+KYPT SP+   +  + P    TTA+    SA   SL        G     +  R L  
Sbjct: 251 EAKYPTVSPTNEPSAHSRPSPQGTTANS--SSASISSLHNTTPDGEGKYRSVQNGRALNY 308

Query: 463 F*KF*RHSKSRA*VGKTAYTMEPG 534
              F   S S       +YT EPG
Sbjct: 309 VSSFNSDSHSPKDYISQSYTNEPG 332


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 390 ITKRCAADVARIVNASEDSSLPTDILKILTTFKISSVSWQNGLYYGAGYELPADLKTQTA 569
           +TK C      + N+SE  +L  DI++ L    I+ +    GL Y   +EL +   + T 
Sbjct: 557 VTKLCRIGQKCVDNSSESRTLWLDIIRSLLLPLITLIDVNTGLSYEL-FELLSKFDSSTR 615

Query: 570 FS 575
           ++
Sbjct: 616 YA 617


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 155 LSIGIFTRWYIPK*GIGEYAYNR 87
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,657
Number of Sequences: 5004
Number of extensions: 53695
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)