Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00681
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.54 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.94 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 195 FSFSPLIDMVYQPSVDRDLHEVVHTEV 115
           FSF     +VY+PS  R  HE+  T+V
Sbjct: 507 FSFHQWGILVYEPSACRPRHEIRSTDV 533


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 190 GKVTNLDKIRGFPRSYNVNEQLRSSVRATTRESKYPTGSP--SCLWTTATL 336
           G++ N   I+G P  Y +N+ L S +  T+ E + P  +P  S  WT   L
Sbjct: 481 GRIENT--IQGLPPPYRLNKPLMSLI--TSSEVRQPGKAPNYSVNWTIGQL 527


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 325 TATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPKTRR 450
           T TLP  S T      PSA   + +     + G +T P TRR
Sbjct: 225 TTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP-TRR 265



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 253 LRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLL 372
           L     +T+  +   T + +   TTAT   T+ TTA+ L+
Sbjct: 94  LHPPASSTSLPATITTTTTTTTTTTATAAATATTTATGLI 133


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -1

Query: 156 SVDRDLHEVVHTEVGYWGVRIQQVLICVVVWLRGG 52
           S+DR +H       G W  R   V    VVWL  G
Sbjct: 120 SLDRYIHIKDPLRYGRWVTRRIAVAGIAVVWLLAG 154


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = -1

Query: 270 PY*RAQLFVHIVAPREASYLVKVSHFSFSPLIDMVYQPSVDRDLHEVVHTE 118
           PY      +HI +    S  +K++      ++D +Y  + + ++  + H+E
Sbjct: 167 PYDILNCTIHIASWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSE 217


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 196 VTNLDKIRGFPRSYNVNEQLRSSVRATTRE 285
           +T L  +R F  SYN  + L   + A+TR+
Sbjct: 257 LTGLTVLRTFNASYNSLDSLPEGLFASTRD 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,623
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)