Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00680
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces...   101   9e-23
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    31   0.084
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    27   1.8  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.4  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   2.4  
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|...    25   7.3  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   9.6  

>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 195

 Score =  101 bits (241), Expect = 9e-23
 Identities = 46/76 (60%), Positives = 58/76 (76%)
 Frame = +2

Query: 251 KGPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 430
           K PRSRTLT+V++AILED+VFP EI+GKR R   DG + IKV LD     T+++K+ +F 
Sbjct: 113 KRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFS 172

Query: 431 SVYKKLTGREVTFEFP 478
           SVY KLTG+ VTFEFP
Sbjct: 173 SVYHKLTGKNVTFEFP 188



 Score = 96.3 bits (229), Expect = 3e-21
 Identities = 43/83 (51%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
 Frame = +3

Query: 6   TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 182
           ++ D+  +LR L IT A+E+E+   KK+I+++VP P LKAF K Q RL RELEKKF+ +H
Sbjct: 32  SSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRH 91

Query: 183 VVFVGDRKILPKPSHKTRVANKQ 251
           V+F+  R+ILPKP  K+RV  K+
Sbjct: 92  VIFIAQRRILPKPGRKSRVTQKR 114


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 31.5 bits (68), Expect = 0.084
 Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
 Frame = +2

Query: 266 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 442
           ++L + YD + EDL   ++ +GK+  ++   ++L  VHL  +   TIE  +  F Q+V  
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621

Query: 443 KLTGREVTFEFP 478
           + T    +F+ P
Sbjct: 622 QSTKSTASFQLP 633


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -3

Query: 223 LGLGRILRSPTKTTCLPLNFFSSSRTS 143
           LG   I +SPTK    PLNFF SSR S
Sbjct: 33  LGTNVIAQSPTK----PLNFFHSSRWS 55


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 250 KRATLKDIDLCVRCYPRGLGLPC 318
           ++AT++++D C  C  RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 93  IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 185
           +++P  K   F+KI+  +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130


>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 399 VCWFLSKCTLMSCEPSNLTLMR 334
           +C FL K T  SC   NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 162 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKGHAQG 269
           KK +G +  F GD+K L         A+K   +AQG
Sbjct: 305 KKLTGPNTKFTGDKKQLIDDLEDALYASKIISYAQG 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,135,512
Number of Sequences: 5004
Number of extensions: 41618
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)