Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00680
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 101 3e-22
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 100 9e-22
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 54 6e-08
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 32 0.26
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.4
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 1.8
05_04_0068 + 17635693-17637204 28 5.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 101 bits (243), Expect = 3e-22
Identities = 42/74 (56%), Positives = 63/74 (85%)
Frame = +2
Query: 257 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 436
PR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +V
Sbjct: 114 PRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAV 173
Query: 437 YKKLTGREVTFEFP 478
Y++L G++V FE+P
Sbjct: 174 YRRLCGKDVAFEYP 187
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/78 (48%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 185
N +LK++L++LYI A ++++ N+K+++I+VP KAF+KI +RLVRELEKKFSGK V
Sbjct: 34 NQELKSELKDLYINNAVQMDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDV 93
Query: 186 VFVGDRKILPKPSHKTRV 239
V V R+I+ P + V
Sbjct: 94 VIVATRRIVRPPKKGSAV 111
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 100 bits (239), Expect = 9e-22
Identities = 41/74 (55%), Positives = 61/74 (82%)
Frame = +2
Query: 257 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 436
PR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +++K+ LD ++ E+K+DTF SV
Sbjct: 127 PRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSV 186
Query: 437 YKKLTGREVTFEFP 478
Y++L G++V F++P
Sbjct: 187 YRRLCGKDVVFDYP 200
Score = 79.8 bits (188), Expect = 1e-15
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Frame = +3
Query: 9 NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 185
N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVRELEKKFSGK V
Sbjct: 47 NQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDV 106
Query: 186 VFVGDRKILPKPSHKTRV 239
V V R+I+ P + V
Sbjct: 107 VLVATRRIVRPPKKGSAV 124
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 54.4 bits (125), Expect = 6e-08
Identities = 29/64 (45%), Positives = 43/64 (67%)
Frame = +3
Query: 39 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 218
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 219 PSHK 230
P +K
Sbjct: 89 PLNK 92
Score = 31.5 bits (68), Expect = 0.45
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 257 PRSRTLTSVYDAILEDLVFPAEIVG 331
PR+RTL +V+D ILED+V ++G
Sbjct: 99 PRTRTLITVHDGILEDVVSQLRLLG 123
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 251 KGPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 373
+GP +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 84 QGPNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 308 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 415
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -3
Query: 253 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 137
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>05_04_0068 + 17635693-17637204
Length = 503
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +1
Query: 178 NM*SLLETVRSCLSPATKLVLLTNKRATL 264
N S L VRSC+S A+++++L+ K+ TL
Sbjct: 212 NKLSGLMNVRSCISHASEIIMLSLKKETL 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,931,380
Number of Sequences: 37544
Number of extensions: 275847
Number of successful extensions: 625
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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