Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00680
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   120   7e-28
Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   5.0  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   5.0  
U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U40933-3|AAL27241.1|   85|Caenorhabditis elegans Temporarily ass...    27   8.8  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  120 bits (289), Expect = 7e-28
 Identities = 52/78 (66%), Positives = 68/78 (87%)
 Frame = +2

Query: 251 KGPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 430
           K PRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KVHLDK+ QT + HK+  F 
Sbjct: 115 KRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVHLDKSHQTNVGHKIGVFA 174

Query: 431 SVYKKLTGREVTFEFPEP 484
           SVY+KLTG++VTFEFP+P
Sbjct: 175 SVYRKLTGKDVTFEFPDP 192



 Score =  101 bits (241), Expect = 4e-22
 Identities = 48/85 (56%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   ETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH 182
           ETN D+++QL+ELYI   KE+EL NK +IIIYVP+P+LKAF KI   LVRELEKKF G+ 
Sbjct: 31  ETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVPQLKAFHKIHPALVRELEKKFGGRD 90

Query: 183 VVFVGDRKILPKPSHKTRV-ANKQK 254
           ++ +  R+ILPKP   ++    KQK
Sbjct: 91  ILILAKRRILPKPQRGSKARPQKQK 115


>Z32679-9|CAA83593.3|  337|Caenorhabditis elegans Hypothetical
           protein C05B5.5 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 208 SCLSPATKLVLLTNKRATLKDIDLC 282
           S +S A  + +L NK+  +KDIDLC
Sbjct: 39  SRISKAIHVTILKNKKFAVKDIDLC 63


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 344 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 475
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 344 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 475
           VK+ GS      +D   Q+T   K+DTF+ +++    R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435


>U41263-5|AAC24427.1|  400|Caenorhabditis elegans Hypothetical
           protein T19D12.7 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 218 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDD 90
           L+QD     K +MF    +F   DK  +D  + L+F+  + DD
Sbjct: 167 LQQDFRSFQKVWMFNKTEMFSADDKTFIDSNRSLEFQVLNEDD 209


>U40933-3|AAL27241.1|   85|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 291 protein.
          Length = 85

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +1

Query: 211 CLSPATKLVLLTNKRATLKDIDLCVRCY-----PRGLGLPC*DRRQAHQGQVGRL 360
           C + A K  L     +  +    C RCY     PRG G    +    HQGQ G++
Sbjct: 31  CENEACKKTLAAGSHSEREGKPYCNRCYGALFGPRGYGHGGTESHTFHQGQTGQV 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,883,458
Number of Sequences: 27780
Number of extensions: 238488
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)