Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00679
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyce...    89   2e-19
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   1.4  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    26   1.8  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   2.4  
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    25   4.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    24   5.6  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    23   9.8  

>SPBC18E5.06 |rps21||40S ribosomal protein S21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 88.6 bits (210), Expect = 2e-19
 Identities = 44/74 (59%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = +3

Query: 36  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSK-MYVVCGAI 212
           M+N+AG+ VDLY PRKCSA+NR+I AKDHASVQ+ +  VD A GR     K  Y + G +
Sbjct: 1   MENEAGQLVDLYVPRKCSATNRIIQAKDHASVQINVCAVD-AEGRQIPGEKTTYAISGFV 59

Query: 213 RRMGESDDCIVRLT 254
           R  GESDDCI RLT
Sbjct: 60  RSKGESDDCINRLT 73


>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -3

Query: 166 PVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYVR 23
           P+     A+T  TE W++A+    +A  F     S       C  Y+R
Sbjct: 482 PILQKICAVTRTTETWAVAFAHYEMAVAFFESNGSKKEGLKHCDAYLR 529


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = -3

Query: 268 YTIFLVNLTMQSSDSPILR----IAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMR 101
           + IF+ + T  S    IL+    +    +  L VS+      S   ++     W+  W  
Sbjct: 139 FDIFMKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWAFDWPM 198

Query: 100 RLLAEHFLGQYKSTNSPASFCILYVR 23
             L E F+   + TN+     + Y+R
Sbjct: 199 MNLQETFIYWDRCTNACLRLLLCYIR 224


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 136 SCTEAWSLAWMRRLLAEHFLGQYKST 59
           S T+A SL W  +   +H + Q+KST
Sbjct: 649 SATKAHSLGWEFKANDDHIIRQFKST 674


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 118 SLAWMRRLLAEHFLGQYKSTNSPASFCILYV 26
           SL  M  +L EH+ G++    SP   CI+ V
Sbjct: 575 SLERMIAILTEHYAGKWPFWMSPRQVCIIPV 605


>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -2

Query: 212 DSPT--DNIHFRCVSSTTCGGVYVSN 141
           D PT  D I   C     CGG+Y +N
Sbjct: 214 DEPTRHDIIRHACPGGGACGGMYTAN 239


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 77  RAVQVNEFTGVVLHFICTST 18
           RAV + + TG VLHF  T T
Sbjct: 808 RAVPLRDCTGSVLHFFGTMT 827


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 261 MVYWLKTINISFIKQLFYKIK*KNK 335
           +VY+LKT+ I F +    KI+  N+
Sbjct: 731 LVYYLKTLGILFFETFTSKIEGANR 755


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,398
Number of Sequences: 5004
Number of extensions: 25515
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)