Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00679
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     73   6e-14
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    71   2e-13
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   0.31 
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     27   2.9  
11_01_0226 - 1766006-1766455                                           27   3.9  
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    26   6.7  
01_01_0760 + 5860893-5861065,5861549-5862443                           26   6.7  
11_06_0129 - 20397179-20397537,20397749-20400497                       26   8.9  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 72.9 bits (171), Expect = 6e-14
 Identities = 37/75 (49%), Positives = 48/75 (64%)
 Frame = +3

Query: 36  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 215
           MQN+ G+ VDLY PRKCSA+NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 216 RMGESDDCIVRLTRK 260
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 36/75 (48%), Positives = 47/75 (62%)
 Frame = +3

Query: 36  MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGRAADTSKMYVVCGAIR 215
           MQN+ G+ VDLY PRKCS +NR+I AKDHASVQ+ I  VD   G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVD-ENGLYDGRFTTFALSGFIR 59

Query: 216 RMGESDDCIVRLTRK 260
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 28  HIKCRTTPVNSLTCTARGNARPATASST 111
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 15  PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLI 107
           P G+  + Q D G  ++L  CP +CS + +L+
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV 286


>11_01_0226 - 1766006-1766455
          Length = 149

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 263 HLSC*PHDAIIRLSHP--SDSPTDNIHFRCVSSTTCGGVYVSNH 138
           HL   P   + RL  P  +D+PT ++    ++   CGG+ V+ H
Sbjct: 104 HLPLAPSPELARLHPPVNTDAPTPHVLLVQINRFACGGLVVTLH 147


>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 30  YKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCG 206
           YK  +D  +  DL+ P +C  + + IH KD   V L   DV  A    AA  +   +V G
Sbjct: 82  YKQPSDP-QMKDLFLPFRCFCTRKDIHCKD---VVLDDHDVSKAIVEFAAHAAIEKLVVG 137

Query: 207 AIRRMG 224
           A  R G
Sbjct: 138 ATARGG 143


>01_01_0760 + 5860893-5861065,5861549-5862443
          Length = 355

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = -3

Query: 301 LMNEMLIVFSQYTIFLVNLTMQSSDSPILRIAPQ----TTYILDVSAARPVAGSTSAITS 134
           ++  +LI+ S  T  L ++ M    +P+LR  P     TT+   +SAA+ +A +  A   
Sbjct: 160 IVGTVLILLSNVTWLLWSMLM----APVLREYPNKLLATTWQCVISAAQSLAVAAVAAAR 215

Query: 133 CTEAWSLAWMRRLLAEHFLG 74
              AW L     LLA  + G
Sbjct: 216 DPAAWRLRLDTGLLAVAYSG 235


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 160 AGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFC 38
           AGS+S+  +  +  +L   + +L+   LG   S NS + FC
Sbjct: 20  AGSSSSSNATADELALLSFKSMLSSPSLGLMASWNSSSHFC 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,445,058
Number of Sequences: 37544
Number of extensions: 175696
Number of successful extensions: 510
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)