Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00676
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 97 1e-20
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827... 64 8e-19
02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827... 40 0.003
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 30 1.6
03_05_0195 - 21822418-21822441,21822480-21822659,21823337-218234... 29 3.8
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 28 6.6
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 28 6.6
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 28 6.6
07_01_1151 - 10822616-10823863 28 8.8
04_03_0121 + 11506644-11508107 28 8.8
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 97.5 bits (232), Expect = 1e-20
Identities = 46/84 (54%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +1
Query: 259 LPSILLNSHMDVVPVFENSWKHPPFAA--EIEDNVIYARGVQDMKSVGIQYIEAVRRLKE 432
LPS+LLNSH+D VP W HPPFAA + +YARG QD K + IQY+EA+R L++
Sbjct: 102 LPSLLLNSHLDSVPAEPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIRGLRD 161
Query: 433 TGVKLKRTVHLSFVPDEEIGGDTG 504
G RT+H+S VPDEEIGG G
Sbjct: 162 AGFAPTRTLHISLVPDEEIGGADG 185
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/74 (39%), Positives = 43/74 (58%)
Frame = +3
Query: 510 KFVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPDNCG 689
KF Q++ F+++NVGF LDEG AS D++ VF G+R++W + + G GHGS L
Sbjct: 188 KFAQSEEFRDLNVGFMLDEGQASLTDEFRVFYGDRLVWRLIVKATGAPGHGSKLFDGAAV 247
Query: 690 EKLRYIIDKFMDLR 731
E L ++ R
Sbjct: 248 ENLMDCVETIAGFR 261
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Frame = +2
Query: 20 FCLISAML-RIHTTSSVKIDPS-VSTLQNYLRIRSVHPNVDYNECINFLKNEAEKIGLQV 193
F L+SA++ R + +++ + + Q+YLRIR+ HP+ DY FL A +GL+
Sbjct: 18 FLLLSAVVARPAAGAFTELESAQIGRFQDYLRIRTAHPSPDYAGAAAFLLPYAASLGLRA 77
Query: 194 QVVE--PLPKKPTLVMTWLG 247
+ P KP L++TW G
Sbjct: 78 ATLHFTPCKSKPLLLLTWPG 97
>08_02_1223 -
25381462-25381575,25381822-25382061,25382570-25382707,
25383397-25383849,25384528-25385010
Length = 475
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/73 (42%), Positives = 41/73 (56%)
Frame = +3
Query: 513 FVQTDVFKNMNVGFALDEGVASPNDDYLVFNGERIIWHVKITCPGKSGHGSLLLPDNCGE 692
FV + FK+MNVG LDEG+ASP ++Y VF GER W + I G GHG+ L + E
Sbjct: 207 FVASKEFKDMNVGLVLDEGLASPGEEYRVFYGERSPWWLTIKAKGAPGHGAKLYDGSAME 266
Query: 693 KLRYIIDKFMDLR 731
L ++ R
Sbjct: 267 NLMKSVEAIRRFR 279
Score = 58.4 bits (135), Expect(2) = 8e-19
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = +1
Query: 379 DMKSVGIQYIEAVRRLKETGVKLKRTVHLSFVPDEEIGGDTGM 507
DMK VG+QY+EA+RRL+ G R ++L+FVPDEEIGG G+
Sbjct: 162 DMKCVGMQYLEAIRRLRSAGFIPDRNIYLTFVPDEEIGGHEGI 204
Score = 53.2 bits (122), Expect(2) = 8e-19
Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Frame = +1
Query: 247 RAAELPSILLNSHMDVVPVFENSWKHPPFAAEIED--NVIYARGVQ 378
R LPS+LLNSH DVVP + W HPPF+A +++ IYARG Q
Sbjct: 86 RRPSLPSLLLNSHTDVVPSEPHKWDHPPFSAALDEASGRIYARGSQ 131
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +2
Query: 56 TSSVKIDPSVSTLQNYLRIRSVHPNVDYNECINFLKNEAEKIGLQVQVVEPLPKKPTLVM 235
+SS + VS + YLRI + P DY + FL+ +A GL+ + +E + KP L++
Sbjct: 22 SSSDAEEAVVSRFREYLRIDTAQPAPDYAAAVAFLRGQAGAAGLEARTLELVAGKPLLLL 81
Query: 236 TWLGEQLS 259
W G + S
Sbjct: 82 RWPGRRPS 89
>02_05_0374 +
28381456-28381785,28382302-28382555,28382665-28382773,
28383272-28383410,28383525-28383582,28384179-28384196,
28384301-28384423,28384483-28384681,28384763-28384796,
28385044-28385153
Length = 457
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = +1
Query: 283 HMDVVPVFENSWKHPPFAA--EIED-NVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKR 453
HMDVVP + W PF+ + ED + + RG D + +RRL E LK
Sbjct: 99 HMDVVPANPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHVALVAQLMRRLGEVKPVLKH 158
Query: 454 TVHLSFVPDEEIGGDTGMG 510
+V F+ +EE TG+G
Sbjct: 159 SVIAVFIANEENSLITGIG 177
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 259 LPSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETG 438
LP ++L++ +PV KH P + + R + ++ SVG+ + R + G
Sbjct: 775 LPHVILSA----IPVI----KHNP---DFMSGKVAFRNIMNIVSVGVDTLINERTTQTYG 823
Query: 439 VKLKRTVHLSF 471
+ L++TVHLSF
Sbjct: 824 ILLEKTVHLSF 834
>03_05_0195 -
21822418-21822441,21822480-21822659,21823337-21823453,
21824347-21824412,21825592-21825683,21825924-21825987,
21826098-21826176,21826248-21826387,21827253-21827334,
21827565-21827572,21828005-21828103,21828208-21828285,
21828379-21828472,21828726-21828823,21830299-21830502
Length = 474
Score = 29.1 bits (62), Expect = 3.8
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Frame = +1
Query: 304 FENSWK-----HPPFAAEIEDNVIYARGVQDMKSVGIQYIEAVRRLKETGVKLKRTVHLS 468
F+N W+ P E DN++ DM ++Y+E V +LKE VK +
Sbjct: 257 FKNLWETHQYSRVPVFEERIDNIVGIAYAMDM----LEYVEEVEKLKEITVKEIAHMPTY 312
Query: 469 FVPD 480
FVPD
Sbjct: 313 FVPD 316
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 53 TTSSVKIDPSVSTLQNYLRIRSVHPNVD 136
T S+ KID + TL+NY+++ H + D
Sbjct: 1288 TVSNDKIDENAHTLENYVKMLRAHQSAD 1315
>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 129 TLTTMNASTSSKMKLKRLDYKCKWSNLCQ 215
T T NA ++K+ L R Y+ W+ LCQ
Sbjct: 2155 TPTRSNAGDATKVTLARTWYQALWATLCQ 2183
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 134 DYNECI---NFLKNEAEKIGLQVQVVEPLPKKPTLVMTWLGEQLSCRAYYSTLI 286
+YN+ + N ++N+ KI ++ ++ KK TL +TWL + +STL+
Sbjct: 991 EYNDLMSKKNIIENDKSKIKTVIEELDE-KKKETLKVTWLKVNKDFGSIFSTLL 1043
>07_01_1151 - 10822616-10823863
Length = 415
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = +1
Query: 262 PSILLNSHMDVVPVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQ 402
P L + + PV+ ++W PP E ++ + +K G+Q
Sbjct: 147 PEPALPGYSSLPPVYRDTWNSPPMGEEAAQALVLLDRMLKLKEQGLQ 193
>04_03_0121 + 11506644-11508107
Length = 487
Score = 27.9 bits (59), Expect = 8.8
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Frame = +1
Query: 247 RAAELPSILLNSHMDVV---PVFENSWKHPPFAAEIEDNVIYARGVQDMKSVGIQYIEAV 417
R E ILL + DVV ++ HPP A + + R +Q I V
Sbjct: 167 RPDEAGRILLPEYPDVVIHRSQVSSNVLHPPTAVKHRVEAFFGRQIQLGYKTDALLINTV 226
Query: 418 RRLKETGV-KLKRTVHLSFVP 477
+ TG+ L+RT L +P
Sbjct: 227 EEFEPTGLAMLRRTFRLPVIP 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,139,008
Number of Sequences: 37544
Number of extensions: 425361
Number of successful extensions: 1312
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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