Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00675
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 163 2e-41
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 130 3e-31
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 108 9e-25
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 90 4e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 62 8e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 2e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 58 2e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 51 2e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 44 3e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 33 0.032
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.056
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.40
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.53
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.2
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.8
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 6.5
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 6.5
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 25 8.6
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 25 8.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 163 bits (397), Expect = 2e-41
Identities = 76/83 (91%), Positives = 80/83 (96%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 181
EHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV
Sbjct: 100 EHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159
Query: 182 SHTVPIYEGYALPHAILRLDLAG 250
+HTVPIYEGYALPHAI+RLDLAG
Sbjct: 160 THTVPIYEGYALPHAIMRLDLAG 182
Score = 158 bits (384), Expect = 7e-40
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = +1
Query: 256 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 435
LTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPD
Sbjct: 185 LTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPD 244
Query: 436 GQVITIGNERFRCPEALFQPSFLG 507
GQVITIGNERFR PEALFQPS LG
Sbjct: 245 GQVITIGNERFRAPEALFQPSALG 268
Score = 105 bits (253), Expect = 5e-24
Identities = 47/55 (85%), Positives = 51/55 (92%)
Frame = +2
Query: 575 DLYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIL 739
DLY N V+SGGT MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSIL
Sbjct: 292 DLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSIL 346
Score = 47.6 bits (108), Expect = 2e-06
Identities = 22/34 (64%), Positives = 22/34 (64%)
Frame = +3
Query: 474 PRGSLPTLVLG*EACGIHETTYNSIMKCDVDIRK 575
P LG E GIHE TYNSIMKCDVDIRK
Sbjct: 258 PEALFQPSALGLENAGIHEATYNSIMKCDVDIRK 291
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 130 bits (313), Expect = 3e-31
Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 6/252 (2%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 181
EHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG+
Sbjct: 105 EHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGL 164
Query: 182 SHTVPIYEGYALPHAILRLDLAGXXXXXXXXXXXXXXXXXXXXXXXGKSFVTSRRSC--- 352
+H+VPIY+G+++P AI + ++ G + + C
Sbjct: 165 THSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYV 224
Query: 353 ATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVGSLRHPRD 532
A+ + W P + L + T+ T+ A + NP +GS
Sbjct: 225 ASDFRSEIESWTEHKPQIHTYQLPDNQTITLG---TECFSAPEVLFNP-EMMGS-EASGL 279
Query: 533 HI*LHHEVRRGH---P*DLYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAPPE 703
HI L + LY+N VLSGG+ + G +R E+ A++ ++KI A PE
Sbjct: 280 HIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPE 339
Query: 704 RKYSVWIGGSIL 739
R ++ W+GGSIL
Sbjct: 340 RMHNAWLGGSIL 351
Score = 85.4 bits (202), Expect = 8e-18
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +1
Query: 256 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPD 435
+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+ + +Y+LPD
Sbjct: 190 VTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPD 249
Query: 436 GQVITIGNERFRCPEALFQPSFLG 507
Q IT+G E F PE LF P +G
Sbjct: 250 NQTITLGTECFSAPEVLFNPEMMG 273
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 498 VLG*EACGIHETTYNSIMKCDVDIR 572
++G EA G+H + SI+ D+D+R
Sbjct: 271 MMGSEASGLHIQLFKSILLSDIDLR 295
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 108 bits (259), Expect = 9e-25
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 11 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 190
+LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHI 162
Query: 191 VPIYEGYALPHAILRLDLAG 250
VP+YE L H + RLD+AG
Sbjct: 163 VPVYESVVLNHLVGRLDVAG 182
Score = 94.7 bits (225), Expect = 1e-20
Identities = 40/83 (48%), Positives = 59/83 (71%)
Frame = +1
Query: 259 TDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDG 438
T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + + ++ L ++Y LPDG
Sbjct: 186 TRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDG 245
Query: 439 QVITIGNERFRCPEALFQPSFLG 507
+VI +G+ER+ CPE LFQP +G
Sbjct: 246 RVIKVGSERYECPECLFQPHLVG 268
Score = 44.4 bits (100), Expect = 2e-05
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 11/65 (16%)
Frame = +2
Query: 578 LYANTVLSGGTNMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 724
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 725 GGSIL 739
GG++L
Sbjct: 353 GGAVL 357
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 89.8 bits (213), Expect = 4e-19
Identities = 45/91 (49%), Positives = 60/91 (65%), Gaps = 8/91 (8%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGI 157
+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG
Sbjct: 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT 182
Query: 158 VLDSGDGVSHTVPIYEGYALPHAILRLDLAG 250
V+DSGDGV+H +P+ EGY + +I + LAG
Sbjct: 183 VVDSGDGVTHIIPVAEGYVIGSSIKTMPLAG 213
Score = 33.5 bits (73), Expect = 0.032
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 14/77 (18%)
Frame = +2
Query: 551 EVRRGHP*DLYANTVLSGGTNMYPGIADRMQKEITALAPST--------------MKIKI 688
+VR+G LY N VLSGG+ ++ +R+Q+++ + + + +
Sbjct: 321 DVRKG----LYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNV 376
Query: 689 IAPPERKYSVWIGGSIL 739
I+ ++ +VW GGS+L
Sbjct: 377 ISHKRQRNAVWFGGSLL 393
Score = 31.1 bits (67), Expect = 0.17
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Frame = +1
Query: 256 LTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSS--LEKSY 423
+T ++ +L +R S TAER IKE+ CYV D +E + L+ +
Sbjct: 216 VTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVKEFSRFDREPDRYLKYAS 270
Query: 424 ELPDGQVITI--GNERFRCPEALFQP 495
E G TI G ERF PE F P
Sbjct: 271 ESITGHSTTIDVGFERFLAPEIFFNP 296
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 62.1 bits (144), Expect = 8e-11
Identities = 30/72 (41%), Positives = 42/72 (58%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 181
EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 98 EHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAER 157
Query: 182 SHTVPIYEGYAL 217
S IY+G+ L
Sbjct: 158 SSVSAIYDGFVL 169
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Frame = +2
Query: 578 LYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAP---PERKYSVWIGGSIL 739
L N ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL
Sbjct: 346 LLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSIL 401
Score = 33.1 bits (72), Expect = 0.043
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 391 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 495
++ ++ E +E PDG + G ER++ PE LF P
Sbjct: 254 SSETTIAESEFEFPDGSRMMFGAERYQIPEHLFVP 288
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 60.9 bits (141), Expect = 2e-10
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 175
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 176 GVSHTVPIYEGYALPHAILRLDLAG 250
SH +P+ G + R+ G
Sbjct: 175 AASHVIPVLNGERILSEAKRISWGG 199
Score = 35.1 bits (77), Expect = 0.011
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 578 LYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGS 733
L +N +++GG PG+ R+++E+T++ P I + W G S
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGAS 685
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 57.6 bits (133), Expect = 2e-09
Identities = 24/83 (28%), Positives = 48/83 (57%)
Frame = +2
Query: 2 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 181
E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDN 160
Query: 182 SHTVPIYEGYALPHAILRLDLAG 250
+ P+ +G + I + LAG
Sbjct: 161 ASVTPVVDGLIIRKGIFKQSLAG 183
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/79 (36%), Positives = 41/79 (51%)
Frame = +1
Query: 298 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 477
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 478 EALFQPSFLGRKLAASTRP 534
E LF PSF + A +T P
Sbjct: 300 EILFNPSFSASRSAETTPP 318
Score = 39.9 bits (89), Expect = 4e-04
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +2
Query: 578 LYANTVLSGGTNMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSIL 739
L N V++GGT++ PG+++R+Q E+ LA S + + +VW GGSIL
Sbjct: 343 LLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSIL 398
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 519 GIHETTYNSIMKCDVDIR 572
G+HE Y SI+ CD ++R
Sbjct: 323 GLHELVYQSILACDSELR 340
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 51.2 bits (117), Expect = 2e-07
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 20/101 (19%)
Frame = +1
Query: 256 LTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS--SSLEKSYEL 429
LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M S LE Y L
Sbjct: 193 LTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEKPRSKLEICYAL 250
Query: 430 PD------------------GQVITIGNERFRCPEALFQPS 498
PD QV+ + NERF PE LF PS
Sbjct: 251 PDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPS 291
Score = 35.5 bits (78), Expect = 0.008
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 578 LYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAPPE 703
L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 319 LLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSD 360
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 155 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 250
+V+DSG +H +P+ + A+ R+D+ G
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGG 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/82 (31%), Positives = 38/82 (46%)
Frame = +2
Query: 5 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 184
+PV L +RE TQ FE P +A + ++ LYA G G+V+D G +
Sbjct: 147 YPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKT 206
Query: 185 HTVPIYEGYALPHAILRLDLAG 250
PI +G + A +L L G
Sbjct: 207 DITPILDGQIIFTATQQLPLGG 228
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +2
Query: 575 DLYANTVLSGGTNMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSI 736
+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 528 NLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACI 584
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.056
Identities = 21/58 (36%), Positives = 26/58 (44%)
Frame = +3
Query: 96 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVAPHRLP 269
P T+P P T PV P S P+ P P PS++ P PS P AP +P
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVP-APSGIP 1092
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 93 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 230
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 93 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 230
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Frame = +3
Query: 93 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVAPHRL 266
PP +PS +P VPPV P+ P P PS P PS P L
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGL 1226
Query: 267 P 269
P
Sbjct: 1227 P 1227
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 72 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 230
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 72 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 230
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 84 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPS 230
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 117 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 221
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 326 SFVTSRRSCATSLLTSSRKWPPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNP 496
+F +R S A SS + P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 117 PCSRCTRPVVPPVSCWTPATVSPTPCPST 203
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 93 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 200
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 3.7
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 5/82 (6%)
Frame = +3
Query: 93 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTKDTHSPTPSCVWT*PVAP- 257
PP PS P P +PP + P + P P P P+ PVA
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 258 HRLPHEDPHRARLLVHYHRRAG 323
LP +D RA L+ G
Sbjct: 492 AELPQQD-GRANLMASIRASGG 512
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 14 LLTEAPLNPKANREKMTQIMFETFN 88
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = +3
Query: 111 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PVAPHRLPHEDP 281
S+ S T P PP + T PA SP P + H PT S PV + H +P
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV--QQPSHPNP 956
Query: 282 H 284
+
Sbjct: 957 Y 957
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 181 LPHRAHLRRIRTPPRHPASGLSRSRLTDYL 270
LPH + + +TP + P S L R + YL
Sbjct: 376 LPHNKKIDKSQTPAKFPTSVLLRQPIDTYL 405
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 450 SDDLTVGKFVRLLEGAAGCSGGHFLLEVKSDVAQLLL 340
+D VG+ L+ GAAG S GHF EV + + +LL
Sbjct: 350 ADSTFVGRAASLV-GAAGQSQGHF-TEVLNGIGTILL 384
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 341 RRSCATSLLTSSRKWPPLHPAAPSRS-LTNFPTVRSSLSETKDSVAQRLSSNPRS 502
R++ A + +S+ + P++P S L+ FP++ ++SE +Q+ +S+P S
Sbjct: 276 RKTFAKNPTKNSKPAGQVIPSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNS 330
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +1
Query: 28 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 177
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,264,841
Number of Sequences: 5004
Number of extensions: 71316
Number of successful extensions: 323
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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