Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00674X
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.1
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 27 1.5
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.4
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 3.4
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 25 4.5
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 4.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 4.5
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 5.9
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 5.9
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 5.9
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 199 EYGRYMRQAEMEVFNSLTEHFRAVLH 122
E G Y+ + +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 1.5
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 80 VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYS 244
V ++N VY H+ SSK F+K ++ LH F + R G+ ++ +++
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSFT 390
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +2
Query: 116 HDVQYSSKMFRKRVENLHFSLP 181
+D+ ++S +FRKR + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 3.4
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +2
Query: 143 FRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASGTSPKAESAITSAI 295
F R + H ++ H PS+FG+ I G L D T + T P E A S +
Sbjct: 282 FPHRNAHQHNAIAHNPSVFGKPI-GDLTSDPT-NLCKFTFPTPECAPPSLL 330
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Frame = +2
Query: 155 VENLHFSLPHVPSIFGRSIQG---ILAFDKTYSTA 250
VENLH ++ + ++ G +++G IL+FDKT+ TA
Sbjct: 126 VENLH-TMDEL-NMTGNALKGSRPILSFDKTFDTA 158
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -3
Query: 196 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 113
YGR M+ E + + +H+RAV ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 4.5
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 134 SKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYSTASGTSPKAESAITSAISALRXT 313
+++ + ENL S+P P F G F S+ PK + I +++ + T
Sbjct: 23 AELLSSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPK-DKIIGHSVAEVLGT 81
Query: 314 AG-QKFITMYTCLLK 355
G F+ CLLK
Sbjct: 82 DGYNAFMRAVNCLLK 96
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 5.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 155 VENLHFSLPHVPSIFGRSIQGILA 226
++NL +SLP V SI S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 5.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -2
Query: 92 RWCRRKCDXIPRSPQRRVATQRFATSSWQ 6
RWC C R PQ + R+ +++Q
Sbjct: 743 RWCMLACSMYARDPQGALTPLRWVFTTFQ 771
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 5.9
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +2
Query: 116 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 208
H +++ K+ K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,727,646
Number of Sequences: 5004
Number of extensions: 33540
Number of successful extensions: 106
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -