Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00674X
(405 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 36 0.009
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 28 2.4
06_03_0912 + 25896152-25896451,25896528-25897296,25897492-258976... 27 4.3
06_01_0170 - 1352865-1353422,1355049-1355327 27 4.3
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 27 5.6
08_02_1334 - 26224546-26225337 27 7.5
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 27 7.5
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 27 7.5
11_04_0447 - 17829828-17829868,17829958-17830010,17830120-178302... 26 9.9
08_02_0537 - 18313265-18313291,18313352-18315460 26 9.9
06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231 26 9.9
06_03_0117 + 16826133-16826600,16826650-16827201,16827310-168274... 26 9.9
06_02_0203 + 12986685-12988691 26 9.9
04_04_1581 - 34581455-34581466,34581525-34581616,34582584-345826... 26 9.9
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 26 9.9
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 26 9.9
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 36.3 bits (80), Expect = 0.009
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 71 HTFVGTSVNRPLVYHH-DVQYSSKMFRKRVENLHFSLPHVPSIF 199
+T V TS PL +HH +Q S + F+ RV + + + PH+PS F
Sbjct: 78 YTMVPTSAMLPLQHHHRQLQISQENFQDRVPSNNVAAPHLPSNF 121
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 196 YGRYMRQAEMEVFNSLTEHFRAVLHVMVVDQGPIDAGADESVT 68
+GR+ A++ VFN+ + L +++ GP DAG + S T
Sbjct: 256 HGRHWEGADVIVFNTYL-WWCTGLQFRILEDGPFDAGGNSSTT 297
>06_03_0912 + 25896152-25896451,25896528-25897296,25897492-25897658,
25898932-25901013,25901155-25901730,25904503-25905648,
25907056-25908693
Length = 2225
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 59 VEXGHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVPSI 196
+E G F +++ PL+Y H SS + K +ENL SL V +
Sbjct: 1307 IEEGGIFCSSNI--PLLYKHYDGQSSSLVIKNLENLKGSLGEVQEL 1350
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 306 LNAEIAEVIADSALGDVPE 250
+N E AEV+ +ALG+VPE
Sbjct: 132 VNGETAEVVEHAALGEVPE 150
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 68 GHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSLPHVP 190
G VG S NR + +H + S + K+++NL L H+P
Sbjct: 829 GRLIVGLS-NREIKKNHGICSSIPFYFKKIDNLIVILDHLP 868
>08_02_1334 - 26224546-26225337
Length = 263
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 69 VTLSSAPASIGPWSTTMTCSTARKCSVREL 158
VTL+ A++GP T + A C++R+L
Sbjct: 10 VTLADQLAAVGPAGTAAATAAAGSCNLRDL 39
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 26.6 bits (56), Expect = 7.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 10 HDEVANRCVATRRCGDRGMXSHFRRHQR 93
H++ +R V CG + + +F+RHQR
Sbjct: 405 HNKSCHRHVVCDVCGTKQLKKNFKRHQR 432
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 26.6 bits (56), Expect = 7.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 182 EAS*NGGFQLSYGTFSSCTARHGGRPR--AY*RWCRRKCDXIPRSPQRRVATQR 27
E+S + G L TF+ H PR AY C R PRSP +R+ R
Sbjct: 195 ESSYSRGRMLPEDTFAVRPRSHSPGPRGHAYSACCARDFGFTPRSPVKRMDDPR 248
>11_04_0447 -
17829828-17829868,17829958-17830010,17830120-17830200,
17830523-17830666,17830766-17830909,17830982-17831053,
17831348-17831480,17831595-17831679
Length = 250
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = -1
Query: 297 EIAEVIADSALGDVPEAVL*VLSKARMP*MDLP--NMEGT*GKLKWRFSTLLRN 142
E+ + +S G VP VL ++ + +++ N++GT G WR +T++++
Sbjct: 191 ELLRLNKNSLTGTVPMEVLSLVLVGNLTELNVAGNNLDGTVGSTGWRVTTIIQD 244
>08_02_0537 - 18313265-18313291,18313352-18315460
Length = 711
Score = 26.2 bits (55), Expect = 9.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 62 EXGHTFVGTSVNRPLVYHHDVQYSSKMFRKRVENLHFSL 178
E G+ + VNR L+ D+QY+ RV +L L
Sbjct: 213 EEGNNYFNELVNRSLIQPIDIQYNGSARACRVHDLMLEL 251
>06_03_0118 + 16836401-16837456,16837558-16837701,16837812-16838231
Length = 539
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 234 RPIALLLEHHPRRNRL*LRQSPH*XRPRV-KNSLRCIHVCLSIASAI 371
R +A LL+ P + R RV +SLRC+ VC+SI I
Sbjct: 241 RELAFLLDRCPVLENFEIVCHRELLRLRVASHSLRCVEVCMSIVEEI 287
>06_03_0117 +
16826133-16826600,16826650-16827201,16827310-16827453,
16827543-16827959
Length = 526
Score = 26.2 bits (55), Expect = 9.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 234 RPIALLLEHHPRRNRL*LRQSPH*XRPRV-KNSLRCIHVCLSIASAI 371
R +ALLL+ P L + R RV +SLRC+ +C S+ I
Sbjct: 229 RDLALLLDRCPVLENLEIVGHRELVRLRVASHSLRCVELCESVVEEI 275
>06_02_0203 + 12986685-12988691
Length = 668
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 185 VPSIFGRSIQGILAFDKTYSTASGTSPKAESAITSAISALRXTAGQKFITMYTCLLKY 358
+P++ R G+ F TYS + + + ++ +T A L A FI C L +
Sbjct: 183 IPTLKARFDYGVTIFILTYSLVAVSGYRVDTLVTMAQQRLITIAIGAFICFAVCTLVF 240
>04_04_1581 -
34581455-34581466,34581525-34581616,34582584-34582686,
34583761-34583837,34583913-34583959,34584494-34584594,
34584751-34584840,34585152-34585271,34586171-34586517,
34587013-34587285,34587835-34588165
Length = 530
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +2
Query: 71 HTFVGTSVNRPLVYHH--DVQYSSKMFRKRVENLHFSLPHVPSIF 199
+T + T P +HH Q S + F+ V + + + PHVPS F
Sbjct: 87 YTVLPTPAVLPSHHHHHGQSQISQENFQDWVPSNNVAAPHVPSAF 131
>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 26.2 bits (55), Expect = 9.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 71 HTFVGTSV-NRPL-VYHHDVQYSSKMFRKRVENLHFSLPHVPSIFGRSIQGILAFDKTYS 244
H + T V N P+ + HH + +SK+ K ++ L + P +FG+ + IL D +
Sbjct: 1465 HMMLSTMVANTPIDILHHCMFPTSKVKAKAIQLLLGANPMHMRLFGKLLTDILKKDTSVM 1524
Query: 245 TASGTSPKA 271
G+ A
Sbjct: 1525 QVVGSDSNA 1533
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 26.2 bits (55), Expect = 9.9
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 180 LMYLPYSGGPFRAFWPSTRPIALLLEHHPRRNRL*LRQSP 299
L++LP S A P T P LLL HP + + R P
Sbjct: 9 LLFLPLSSASRHAL-PHTPPAPLLLPSHPAQAQAQARAGP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,060,812
Number of Sequences: 37544
Number of extensions: 257505
Number of successful extensions: 665
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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