Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00673
(510 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 98 8e-22
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 98 8e-22
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 75 8e-15
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 42 5e-05
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 32 0.043
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 24 0.40
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 29 0.40
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 29 0.53
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 28 0.93
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 1.2
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 1.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 2.9
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 2.9
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 3.8
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.8
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 26 3.8
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 26 3.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 3.8
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 5.0
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 25 6.6
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 6.6
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 8.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.7
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 25 8.7
SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP subunit|Schizo... 25 8.7
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 25 8.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 8.7
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 8.7
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 97.9 bits (233), Expect = 8e-22
Identities = 44/84 (52%), Positives = 61/84 (72%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDK 182
EI+RMV+EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+ SDK+ I
Sbjct: 512 EIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKA 571
Query: 183 CNNTIKWLDSNQLADKEEYEHKQK 254
TI+WLD N A K+EYE KQK
Sbjct: 572 VKETIEWLDHNTTAAKDEYEDKQK 595
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 251 EKLEGIYNPIITKMYQ 298
++LEG+ NPI+ K+YQ
Sbjct: 595 KELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 97.9 bits (233), Expect = 8e-22
Identities = 44/84 (52%), Positives = 62/84 (73%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDK 182
EI+RMV EAEKY+ ED+ + IQAKN LESY +S++++++D LK+K+ SDK+T+
Sbjct: 512 EIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKA 571
Query: 183 CNNTIKWLDSNQLADKEEYEHKQK 254
TI+WLDSN A K+E+E KQK
Sbjct: 572 VKETIEWLDSNTTAAKDEFEAKQK 595
Score = 25.0 bits (52), Expect = 6.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 242 AQAEKLEGIYNPIITKMYQ 298
A+ ++LE + NPI+ K+YQ
Sbjct: 592 AKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 74.5 bits (175), Expect = 8e-15
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILD 179
+IERMV EAE++ ED KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD
Sbjct: 542 DIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLD 601
Query: 180 KCNNTIKWLD-SNQLADKEEYEHKQKNWKA 266
+ +WL+ + A KEE+E +++ A
Sbjct: 602 AVEDVAEWLEIHGEDASKEEFEDQRQKLDA 631
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 41.9 bits (94), Expect = 5e-05
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME--DEKLKEKISDSDKQTIL 176
EIE MV +AEKYR D +KE I+ N ES C ++S ++ +KL ++ + + I
Sbjct: 554 EIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIHKDKLDQQAVEDLRSKIT 613
Query: 177 D 179
D
Sbjct: 614 D 614
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 32.3 bits (70), Expect = 0.043
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 179
++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE + +
Sbjct: 492 KLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQNENQHK 550
Query: 180 KCNNTIKWLDSNQLADKEEYEHKQKNWKAFTI 275
+ + + + D + + K+K W T+
Sbjct: 551 RSSRKLLYEDKQAIQEAHTINTKRKLWPQSTL 582
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 23.8 bits (49), Expect(2) = 0.40
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +3
Query: 48 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNNTIKWLDSNQLA 224
D ++E I A AL + E+ I +K T+ D+ N+T +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 225 DK 230
DK
Sbjct: 238 DK 239
Score = 23.8 bits (49), Expect(2) = 0.40
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 297 RVPEESPEVCRASRAEHPEPEVP 365
++ ++ P RASRA EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.1 bits (62), Expect = 0.40
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKSTMED 128
E+ EAE DK ET+ KNALE Y + ++ ++D
Sbjct: 554 EVLEKYREAEHQMIATDKLVAETVDRKNALEEYIYDTRAKLDD 596
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.53
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 45 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNNTIKWL 206
E DK ET+ K A+ S+ +++++++ K+S D L+ CNN + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.9 bits (59), Expect = 0.93
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +3
Query: 129 EKLKEKISDSDKQTILDKCNNTIKWLDSNQLADK--EEYEHKQKNWKAFTIR*LRRCTRV 302
++ KE+ S S ++LD N + N + D+ E +HK K T+R L RC ++
Sbjct: 404 DRFKERKS-SLVHSLLDAANAIFESCGLNDIMDETLEFLKHKNPQVKTETLRWLNRCLQL 462
Query: 303 PEESP 317
+ P
Sbjct: 463 TDVCP 467
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 1.2
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Frame = +3
Query: 24 EAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL-KEKISDSDKQTILDKCNNTIK 200
EAE+ + E ++Q+ Q K E + K E EKL KE+I ++Q ++ + ++
Sbjct: 94 EAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQEQQRRKEERDQKLR 152
Query: 201 WLDSNQLADKEEYEHKQK 254
+ Q +E+ +K++
Sbjct: 153 EKEEAQRLRQEQILNKER 170
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 15 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 119
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 2.2
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 21 NEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNNTIK 200
N+ E + DDKQ + KN+LE+ M+ + E K D ++ LDK + K
Sbjct: 1272 NKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNEMEDLDKMEDLEK 1330
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 2.9
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 9 ERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKC- 185
E ++EK ++ K + KNA ++ M DE+ E S K+ K
Sbjct: 100 EEEEEDSEKPVRKNKKSSKKASPKNAFDALADDMDDLSLDEEESESSEKSKKKKKKSKSK 159
Query: 186 NNTIKWLDSNQLADKEEYEHKQKNWK 263
++ + LD + E+ + K+K K
Sbjct: 160 DDGSEALDDGDIESSEKDKKKKKKSK 185
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 306 EESPEVCRASRAEHPEPE 359
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 105 SMKSTME-DEKLKEKISDSDK--QTILDKCNNTIKWLDSNQLADKE 233
SM+ T + D+K+++K + K Q+ L+ N W D+N+L + E
Sbjct: 2 SMRLTFKGDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNELE 47
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQT 170
EIE M + + + D + + N + CFS +ED K KE +SD K +
Sbjct: 216 EIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDEMKSS 268
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.8 bits (54), Expect = 3.8
Identities = 18/77 (23%), Positives = 32/77 (41%)
Frame = +3
Query: 18 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNNTI 197
+NE + Y + + Q +T + L S C + S L + D + +L C + I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 198 KWLDSNQLADKEEYEHK 248
DS + ++E K
Sbjct: 888 CVKDSIKRLGDNKFEDK 904
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 78 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNNTIKW 203
K E YC S+ ST + + K +SD T+L +T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 226 TRRSMSTSRKIGRHLQSDNYEDVPGCRRSPR 318
TR+S+S S+ +H+ ++ +D+P RS R
Sbjct: 578 TRKSISHSKNTDKHVGNELPQDIPSWLRSLR 608
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 5.0
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 18 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKC 185
V + E+ + D T+Q K +S FS K + E L +KIS+ D QT ++C
Sbjct: 402 VIQPERKEGKLDNLINTLQDKK--KSSTFSKK---DREVLLKKISEIDSQTSFEQC 452
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 6.6
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 131 EAQGKDL*L*QADHPRQVQQHHQVAG-FQPAGRQGGV*AQAEKLEGIYNPIITKMY 295
E GKD + DH + + G FQ AG+ + L+G+Y+ IITK+Y
Sbjct: 239 ELGGKDPCILTDDHRLEEILSIVMRGVFQSAGQNCIGIERIIALDGVYDTIITKLY 294
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 6.6
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = +3
Query: 300 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 407
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 205 WI-PTSWPTRRSMSTSRKIGRHLQSDNYEDV 294
W+ P + RRS T GR++ +D+ EDV
Sbjct: 53 WLDPELYGLRRSGRTRSNPGRYVDTDDQEDV 83
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 8.7
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 72 QAKNALESYCFSMKSTMEDEKLKEKISDSDKQ--TILDKCNNTIKWLDSNQLADKEE 236
+A+ A + +E EK KEK D D++ T+ DK N I ++ Q EE
Sbjct: 254 KAREARRRRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDK--NQIDEIEKGQKEVDEE 308
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 24.6 bits (51), Expect = 8.7
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Frame = +3
Query: 18 VNEAEKYRNEDDKQK-ETI----QAKNALE-SYCFSMKSTME-DEKLKEKISDSDKQTIL 176
V E K R+ED+ QK ET+ + K +E S+ S + E +K++ S+ K +
Sbjct: 463 VEEPSKKRDEDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVS 522
Query: 177 DKCNNTIKWLDSNQLADKEEY 239
D+ +S ++ +KE +
Sbjct: 523 DEAPKAAPLAESKKVEEKEPF 543
>SPBC1703.01c ||SPBP4H10.22c|RNase P and RNase MRP
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 24.6 bits (51), Expect = 8.7
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 51 DKQKETIQAKNALESYCFSMKSTMEDE-KLKEKISDSDKQTILDKCNNTIKWLDSNQLAD 227
++ K I K A + +E + KE ++ ++ + K ++ ++AD
Sbjct: 33 EEAKNVINEKIAFKPLLLVPSLNLEKQGDRKESVASKKRKKLSSKEKKKLQLNVVPKIAD 92
Query: 228 KEEYEHKQKNWKAFTIR*LRRCT 296
+++H W ++ + + CT
Sbjct: 93 YSQFKHLHSMWCSYILEVIAGCT 115
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 345 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 467
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.6 bits (51), Expect = 8.7
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 179
+I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +D
Sbjct: 393 DIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVD 451
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 24.6 bits (51), Expect = 8.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 3 EIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 116
E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 302 EQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 105 SMKSTMEDEKLKEKISD 155
S+K MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,862,545
Number of Sequences: 5004
Number of extensions: 35406
Number of successful extensions: 182
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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