Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00672
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.5  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   7.3  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    25   9.7  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    25   9.7  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = -1

Query: 315 PF-NICIDFSGEYMLGAGVCSIYLLHL*ISLKKKVHFDVKFCL--LFVVYSNLVPVLFRA 145
           PF N    F+G  +       ++   L   L     F   F L  +F+VY +  P+L   
Sbjct: 97  PFPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFL 156

Query: 144 FQLHLCLLKCISVRF-LTNVLSFLV 73
           F   LC+   +S  F L+++LS  +
Sbjct: 157 FFFFLCVCVFLSFLFSLSHLLSLAI 181


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 512  YRSHYNVFSRSVIHCEEQSVL*FEMYKTVNSHVILCPL 399
            ++ H+ V +R   +C +     ++ Y+   SH I C L
Sbjct: 1433 FKPHWQVITRIPQYCHDTHYGVYDAYRDFRSHYIHCSL 1470


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +3

Query: 450 KNRLFFAVNHRTREDVVMATVE 515
           KNRLF+ +  + ++D++  T+E
Sbjct: 115 KNRLFYLIKTKFKDDMISGTLE 136


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 177 YSNLVPVLFRAFQLHLCLLKCIS 109
           Y N  PV+F  F +H C ++ +S
Sbjct: 411 YVNAKPVVFARFNMHTCKVQDVS 433


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +2

Query: 359 ISETPA--PNSYEPQKADKVLHESSPSYTFR 445
           +S  PA   NSY+ Q A+    E SP+YT R
Sbjct: 449 VSGQPAMNENSYDLQNANLCAPEMSPTYTAR 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,206
Number of Sequences: 5004
Number of extensions: 60909
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)