Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00672
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0081 - 1033837-1034090,1034500-1034686,1034713-1034941,103... 31 0.81
08_01_1039 + 10548266-10548619,10548734-10549213,10549408-105495... 30 1.9
07_03_1682 + 28630622-28630832,28630882-28630922,28630983-286311... 29 3.3
07_01_1152 - 10837540-10839549 29 4.3
07_01_0225 - 1650665-1652743 28 5.7
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 5.7
04_04_0785 + 28048368-28048372,28049387-28049447,28050083-280501... 28 5.7
02_05_0877 + 32403363-32404662,32406545-32406630,32406709-324070... 28 5.7
02_03_0025 - 14038896-14039456,14040279-14040491 28 7.6
>10_01_0081 -
1033837-1034090,1034500-1034686,1034713-1034941,
1035328-1035638
Length = 326
Score = 31.1 bits (67), Expect = 0.81
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 147 HEITPAPNCYTPQKADRILHQSAPSFSMRSKDVVDKLNTPLR-LTCILQ 290
H IT AP +T A R L +SAP F D+V + N L C +Q
Sbjct: 91 HNITAAPCHHTSGNASRTLPRSAPKFFKNYFDIVRRNNEHLHDFLCSVQ 139
>08_01_1039 +
10548266-10548619,10548734-10549213,10549408-10549510,
10549550-10550175
Length = 520
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +3
Query: 183 QKADRILHQSAPSFSMRSKDVVDKLN------TPLRL 275
Q+ D++LH S S+ KDV DKLN TP+RL
Sbjct: 440 QQFDQVLHDLGASVSIIPKDVFDKLNFTVLASTPMRL 476
>07_03_1682 +
28630622-28630832,28630882-28630922,28630983-28631156,
28631258-28631426,28631541-28631935
Length = 329
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 210 SAPSFSMRSKDVVDKLNTPLRLTC 281
+AP+FS+R DV+D + T + C
Sbjct: 99 AAPNFSVRGYDVIDSIKTQIEAVC 122
>07_01_1152 - 10837540-10839549
Length = 669
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 272 PNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHESS 427
P+ +S + H G K +LG GF K+ + S P +V HES+
Sbjct: 333 PHRFSFKDMYHATEGFNKNNLLGVGGFGKVYKGVLQKSKVPVAIKRVSHEST 384
>07_01_0225 - 1650665-1652743
Length = 692
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 272 PNMYSPEKSMHMLNGGPKYTILGKTGFTKISETPAPNSYEPQKADKVLHES 424
P+ +S + H +G +LG GF K+ + P+S +V HES
Sbjct: 354 PHRFSYKDLFHATHGFDNKNLLGAGGFGKVYKGVLPSSKLEVAVKRVSHES 404
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 21 TKSEITKVHDAPAPNIYSPEKTIHSLKSGPKYTLAGKGVAEKHEITPAPNCYTPQKADRI 200
T+S + H +P P +P + ++ +++ + A KHE +PA A R
Sbjct: 18 TRSSSARGHASPTP---TPTLRRSTRETTSRFSSSSSSSANKHEGSPAKQSANNNTAKRK 74
Query: 201 LHQSAPSFSMRSKDVVDKLN 260
++ +A S R KLN
Sbjct: 75 MNNAAADTSTRPIKKNKKLN 94
>04_04_0785 +
28048368-28048372,28049387-28049447,28050083-28050151,
28050249-28050303,28050386-28050433,28050534-28050629,
28050895-28051051,28051250-28051340,28051431-28051559,
28051650-28051803,28052147-28052241,28052316-28052498
Length = 380
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 284 SPEKSMHMLNGGPKYTILGKT 346
SP+ +MH L G KYT+ G T
Sbjct: 279 SPKSTMHFLPGSYKYTVRGST 299
>02_05_0877 +
32403363-32404662,32406545-32406630,32406709-32407077,
32407174-32407257,32407362-32407784,32408368-32408434,
32409238-32409430,32409577-32409680,32409787-32409990,
32410174-32410427,32410511-32410735,32410812-32411033,
32411109-32411162,32411337-32411402,32411496-32411633,
32411979-32412032,32412334-32412393,32412975-32413340,
32413415-32413582
Length = 1478
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 419 ESSPSYTFRTKEQIVLRSESPNERRR 496
ESS ++ +KE+ VL SE PN++R+
Sbjct: 236 ESSLNWLLGSKERFVLTSERPNKKRK 261
>02_03_0025 - 14038896-14039456,14040279-14040491
Length = 257
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 186 KADRILHQSAPSFSMRSKDVVDKLN 260
K D++L++ S S+ KDV DKLN
Sbjct: 145 KFDQVLYELGASVSVMPKDVFDKLN 169
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,699,587
Number of Sequences: 37544
Number of extensions: 383953
Number of successful extensions: 947
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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