Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00672
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical pr...    35   0.045
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    35   0.059
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    29   2.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    29   2.2  
U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>Z81113-1|CAB03278.1|  236|Caenorhabditis elegans Hypothetical
           protein T03F6.1 protein.
          Length = 236

 Score = 35.1 bits (77), Expect = 0.045
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = +2

Query: 539 ALGAACVNHFKSFNYWVANIDLNPNEKADFTLL 637
           ALG+A +  FK   Y V NIDL+ N++AD  +L
Sbjct: 14  ALGSAILEFFKKNGYTVLNIDLSANDQADSNIL 46


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 252 YLLHL*ISLKKKVHFDVKFCLLFVVYSNLVPVLFRAFQLH 133
           + LHL IS++  +H    FC+LF    ++  V F+ F LH
Sbjct: 15  FALHLLISIETPIHLFATFCILFKTPISMKSVKFQMFNLH 54


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 362  SETPAPNS--YEPQKADKVLHESSPSYTFRTKEQIVLRSESPNE 487
            SET  P +  YEP++ DKV+ +S+ S   + + +IV   +S  E
Sbjct: 5234 SETQEPGATFYEPEEEDKVITDSADSSVVQDEPKIVFPVDSTPE 5277


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +2

Query: 362  SETPAPNS--YEPQKADKVLHESSPSYTFRTKEQIVLRSESPNE 487
            SET  P +  YEP++ DKV+ +S+ S   + + +IV   +S  E
Sbjct: 5234 SETQEPGATFYEPEEEDKVITDSADSSVVQDEPKIVFPVDSTPE 5277


>U28971-6|AAA68380.2|  300|Caenorhabditis elegans Hypothetical
           protein B0244.5 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/80 (27%), Positives = 39/80 (48%)
 Frame = -1

Query: 309 NICIDFSGEYMLGAGVCSIYLLHL*ISLKKKVHFDVKFCLLFVVYSNLVPVLFRAFQLHL 130
           N+CI F+    + A + + Y L + I   +K++   K   +FVV   +  +   +  + L
Sbjct: 45  NLCIPFT--LFVIAFILNGYYLSILIPEFRKMNDTTKKQYIFVVSRGISSLSASSIMMVL 102

Query: 129 CLLKCISVRFLTNVLSFLVN 70
            LLK +S  F    L FL++
Sbjct: 103 RLLKMLSTSFTVYFLFFLID 122


>Z48795-5|CAA88729.1|  337|Caenorhabditis elegans Hypothetical
           protein R05H5.6 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -1

Query: 198 FCLLFVVYSNLVPVLFRA-FQLHLCL----LKCISVRFLTNVLSFLVNKCLVRAHRELL* 34
           + LL  ++S + P+L+   F+L +C     +K + + + T +L  ++N C+V AH  ++ 
Sbjct: 22  YTLLTSIFS-VFPLLYLIIFKLRVCTFNDNIKFLYIVYFTQILISVLNNCVVFAHHVVIP 80

Query: 33  F 31
           F
Sbjct: 81  F 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,312
Number of Sequences: 27780
Number of extensions: 353994
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)