Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00672
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.5  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.9  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 526 VHDDSTVAITTSSLVR*F 473
           VH+D  V  TTS LVR F
Sbjct: 33  VHNDPLVVETTSGLVRGF 50


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 526 VHDDSTVAITTSSLVR*F 473
           VH+D  V  TTS LVR F
Sbjct: 33  VHNDPLVVETTSGLVRGF 50


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 539 PHDHRTRRFYRSHYNVFSRSVIH 471
           P +HR    Y+SH+++    V++
Sbjct: 61  PPEHRDLPIYQSHHHLHHHQVLY 83


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 184 CGV*QFGAGVISCFSATPLPAKVYFGPLF 98
           CG   F  G++S          VYF PLF
Sbjct: 202 CGTDYFNRGLLSASYLVCYGIWVYFVPLF 230


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +1

Query: 529 WSWGIGCC 552
           W WG+G C
Sbjct: 100 WQWGLGIC 107


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 184 CGV*QFGAGVISCFSATPLPAKVYFGPLF 98
           CG   F  G++S          VYF PLF
Sbjct: 78  CGTDYFNRGLLSASYLVCYGIWVYFVPLF 106


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 341 KTGFTKISETPAPNSYEPQKADKVLHESSPSY 436
           K+G   + + P+   Y P+  +KV  +  P Y
Sbjct: 5   KSGILYLFDRPSEPVYVPKGDNKVAFDIPPDY 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,299
Number of Sequences: 438
Number of extensions: 4445
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)